KEGG   PATHWAY: mpt03030
Entry
mpt03030                    Pathway                                
Name
DNA replication - Methylibium petroleiphilum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mpt03030  DNA replication
mpt03030

Organism
Methylibium petroleiphilum [GN:mpt]
Gene
Mpe_A0049  DNA-directed DNA polymerase [KO:K02342] [EC:2.7.7.7]
Mpe_A2256  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Mpe_A3347  exonuclease [KO:K02342] [EC:2.7.7.7]
Mpe_A2252  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Mpe_A2534  DNA-directed DNA polymerase [KO:K02343] [EC:2.7.7.7]
Mpe_A1859  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Mpe_A0216  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Mpe_A1941  DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
Mpe_A0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Mpe_A1530  primary replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Mpe_B0357  dnaB; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Mpe_A1198  putative replicative DNA helicase protein [KO:K02314] [EC:5.6.2.3]
Mpe_B0195  putative replicative DNA helicase protein [KO:K02314] [EC:5.6.2.3]
Mpe_A2490  putative DNA primase protein [KO:K02316] [EC:2.7.7.101]
Mpe_A2341  conserved hypothetical protein [KO:K03111]
Mpe_A0111  single-strand binding protein [KO:K03111]
Mpe_B0351  ssb; single-strand binding protein [KO:K03111]
Mpe_A1664  single-strand binding protein [KO:K03111]
Mpe_A2527  RNase HI [KO:K03469] [EC:3.1.26.4]
Mpe_B0154  RNase HII [KO:K03470] [EC:3.1.26.4]
Mpe_A1966  RNase HII [KO:K03470] [EC:3.1.26.4]
Mpe_A1148  DNA-directed DNA polymerase [KO:K02335] [EC:2.7.7.7]
Mpe_A1812  DNA ligase (NAD+) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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