KEGG   PATHWAY: msi00020
Entry
msi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobrevibacter smithii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msi00020  Citrate cycle (TCA cycle)
msi00020

Module
msi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msi00020]
Other DBs
GO: 0006099
Organism
Methanobrevibacter smithii [GN:msi]
Gene
Msm_0637  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Msm_0927  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit, KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Msm_0926  2-oxoglutarate ferredoxin oxidoreductase, beta subunit, KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Msm_0925  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit, KorC [KO:K00177] [EC:1.2.7.3]
Msm_0928  2-oxoglutarate ferredoxin oxidoreductase, delta subunit, KorD [KO:K00176] [EC:1.2.7.3]
Msm_0228  succinyl-CoA synthetase, alpha subunit, SucD [KO:K01902] [EC:6.2.1.5]
Msm_0924  succinyl-CoA synthetase, beta subunit, SucC [KO:K01903] [EC:6.2.1.5]
Msm_0447  fumarate hydratase, alpha subunit [KO:K01677] [EC:4.2.1.2]
Msm_0563  fumarate hydratase, alpha subunit [KO:K01677] [EC:4.2.1.2]
Msm_0929  fumarate hydratase, FumA [KO:K01678] [EC:4.2.1.2]
Msm_0769  fumarate hydratase, class I [KO:K01678] [EC:4.2.1.2]
Msm_0765  pyruvate carboxylase (acetyl-CoA/biotin carboxylase), subunit A, PycA [KO:K01959] [EC:6.4.1.1]
Msm_0939  pyruvate carboxylase, subunit B, PycB [KO:K01960] [EC:6.4.1.1]
Msm_0559  pyruvate:ferredoxin oxidoreductase, alpha subunit, PorA [KO:K00169] [EC:1.2.7.1]
Msm_0560  pyruvate:ferredoxin oxidoreductase, beta subunit, PorB [KO:K00170] [EC:1.2.7.1]
Msm_0557  pyruvate:ferredoxin oxidoreductase, gamma subunit, PorG [KO:K00172] [EC:1.2.7.1]
Msm_0558  pyruvate:ferredoxin oxidoreductase, delta subunit, PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msi00010  Glycolysis / Gluconeogenesis
msi00061  Fatty acid biosynthesis
msi00062  Fatty acid elongation
msi00071  Fatty acid degradation
msi00190  Oxidative phosphorylation
msi00220  Arginine biosynthesis
msi00250  Alanine, aspartate and glutamate metabolism
msi00280  Valine, leucine and isoleucine degradation
msi00350  Tyrosine metabolism
msi00470  D-Amino acid metabolism
msi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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