KEGG   PATHWAY: mta00020
Entry
mta00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Moorella thermoacetica ATCC 39073
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mta00020  Citrate cycle (TCA cycle)
mta00020

Module
mta_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mta00020]
mta_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mta00020]
mta_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mta00020]
Other DBs
GO: 0006099
Organism
Moorella thermoacetica ATCC 39073 [GN:mta]
Gene
Moth_1122  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Moth_1882  aconitase [KO:K01681] [EC:4.2.1.3]
Moth_0993  isocitrate dehydrogenase (NADP) [KO:K00030] [EC:1.1.1.41]
Moth_1763  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Moth_0033  Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Moth_1984  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Moth_0034  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Moth_1985  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Moth_1986  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Moth_0036  4Fe-4S ferredoxin, iron-sulfur binding protein [KO:K00176] [EC:1.2.7.3]
Moth_0399  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Moth_0397  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Moth_2283  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Moth_2282  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
Moth_0633  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Moth_1893  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Moth_0378  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Moth_1922  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Moth_0379  ketoisovalerate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Moth_1921  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Moth_1924  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Moth_0376  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Moth_1923  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [KO:K00171] [EC:1.2.7.1]
Moth_0377  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [KO:K00171] [EC:1.2.7.1]
Moth_0064  Pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mta00010  Glycolysis / Gluconeogenesis
mta00061  Fatty acid biosynthesis
mta00071  Fatty acid degradation
mta00190  Oxidative phosphorylation
mta00220  Arginine biosynthesis
mta00250  Alanine, aspartate and glutamate metabolism
mta00280  Valine, leucine and isoleucine degradation
mta00350  Tyrosine metabolism
mta00470  D-Amino acid metabolism
mta00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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