KEGG   PATHWAY: nao03030
Entry
nao03030                    Pathway                                
Name
DNA replication - Nitrospirillum viridazoti
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nao03030  DNA replication
nao03030

Organism
Nitrospirillum viridazoti [GN:nao]
Gene
Y958_00215  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
Y958_27920  hypothetical protein [KO:K02342] [EC:2.7.7.7]
Y958_19915  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
Y958_01835  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Y958_17905  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
Y958_00275  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
Y958_18225  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
Y958_12930  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
Y958_17000  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Y958_10425  DNA primase [KO:K02316] [EC:2.7.7.101]
Y958_18030  single-stranded DNA-binding protein [KO:K03111]
Y958_10580  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
Y958_11135  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
Y958_12315  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Y958_10080  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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