KEGG   PATHWAY: naq03430
Entry
naq03430                    Pathway                                
Name
Mismatch repair - Neisseria animalis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
naq03430  Mismatch repair
naq03430

Other DBs
GO: 0006298
Organism
Neisseria animalis [GN:naq]
Gene
D0T90_05135  mutS; DNA mismatch repair protein MutS [KO:K03555]
D0T90_08615  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
D0T90_03335  DNA helicase II [KO:K03657] [EC:5.6.2.4]
D0T90_08280  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
D0T90_04580  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
D0T90_09030  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
D0T90_08755  single-stranded DNA-binding protein [KO:K03111]
D0T90_06080  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D0T90_02395  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D0T90_01020  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
D0T90_00360  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D0T90_02170  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D0T90_00540  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D0T90_06590  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
D0T90_01705  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D0T90_02135  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
D0T90_02820  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
D0T90_09130  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
D0T90_09600  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
D0T90_10365  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

DBGET integrated database retrieval system