KEGG   PATHWAY: nbt03030
Entry
nbt03030                    Pathway                                
Name
DNA replication - Nocardioidaceae bacterium TYQ2
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nbt03030  DNA replication
nbt03030

Organism
Nocardioidaceae bacterium TYQ2 [GN:nbt]
Gene
KLP28_02515  DEDD exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
KLP28_02140  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
KLP28_08355  DNA polymerase III subunit gamma and tau [KO:K02343] [EC:2.7.7.7]
KLP28_08755  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
KLP28_03655  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
KLP28_06750  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KLP28_06960  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
KLP28_03380  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
KLP28_03995  single-stranded DNA-binding protein [KO:K03111]
KLP28_06935  single-stranded DNA-binding protein [KO:K03111]
KLP28_14005  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
KLP28_03150  bifunctional RNase H/acid phosphatase [KO:K22316] [EC:3.1.26.4 3.1.3.73]
KLP28_01075  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
KLP28_01865  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
KLP28_15020  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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