KEGG   PATHWAY: ocs00020
Entry
ocs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oceanotoga sp. DSM 15011
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocs00020  Citrate cycle (TCA cycle)
ocs00020

Module
ocs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ocs00020]
Other DBs
GO: 0006099
Organism
Oceanotoga sp. DSM 15011 [GN:ocs]
Gene
OF820_05495  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OF820_09875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OF820_04185  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OF820_04580  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OF820_05470  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OF820_00710  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OF820_04575  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OF820_05475  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OF820_00715  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
OF820_04570  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
OF820_04190  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
OF820_04585  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
OF820_07230  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
OF820_07235  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OF820_05045  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
OF820_08670  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
OF820_05040  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
OF820_08665  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
OF820_09890  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
OF820_09885  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
OF820_09880  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
OF820_11590  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
OF820_11585  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
OF820_11600  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
OF820_11595  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ocs00010  Glycolysis / Gluconeogenesis
ocs00053  Ascorbate and aldarate metabolism
ocs00061  Fatty acid biosynthesis
ocs00071  Fatty acid degradation
ocs00190  Oxidative phosphorylation
ocs00220  Arginine biosynthesis
ocs00250  Alanine, aspartate and glutamate metabolism
ocs00280  Valine, leucine and isoleucine degradation
ocs00350  Tyrosine metabolism
ocs00470  D-Amino acid metabolism
ocs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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