KEGG   PATHWAY: paea03018
Entry
paea03018                   Pathway                                
Name
RNA degradation - Paenibacillus sp. FSL R7-0273
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
paea03018  RNA degradation
paea03018

Other DBs
GO: 0006401
Organism
Paenibacillus sp. FSL R7-0273 [GN:paea]
Gene
R70723_00900  eno; enolase [KO:K01689] [EC:4.2.1.11]
R70723_19360  polynucleotide phosphorylase [KO:K00962] [EC:2.7.7.8]
R70723_19185  DEAD/DEAH box helicase [KO:K11927] [EC:5.6.2.7]
R70723_11470  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
R70723_11140  RNA helicase [KO:K05592] [EC:5.6.2.7]
R70723_27020  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
R70723_06315  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
R70723_00600  transcription termination factor Rho [KO:K03628]
R70723_19215  ribonuclease [KO:K18682] [EC:3.1.-.-]
R70723_19310  ribonuclease J [KO:K12574] [EC:3.1.-.-]
R70723_15960  ribonuclease J [KO:K12574] [EC:3.1.-.-]
R70723_11445  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
R70723_25075  dnaK; molecular chaperone DnaK [KO:K04043]
R70723_04920  groEL; molecular chaperone GroEL [KO:K04077] [EC:5.6.1.7]
R70723_13820  RNA chaperone Hfq [KO:K03666]
R70723_18360  RNA-binding protein Hfq [KO:K03666]
R70723_17960  polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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