KEGG   PATHWAY: pmb00020
Entry
pmb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Prochlorococcus marinus AS9601
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmb00020  Citrate cycle (TCA cycle)
pmb00020

Module
pmb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmb00020]
pmb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmb00020]
Other DBs
GO: 0006099
Organism
Prochlorococcus marinus AS9601 [GN:pmb]
Gene
A9601_01791  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
A9601_19101  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A9601_18051  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A9601_14971  lpd; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9601_12591  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A9601_16681  fumC; Fumarate lyase [KO:K01679] [EC:4.2.1.2]
A9601_04701  mqo; putative malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A9601_14871  acoA; Pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
A9601_09301  pdhB; Pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
A9601_04551  pdhC; Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmb00010  Glycolysis / Gluconeogenesis
pmb00053  Ascorbate and aldarate metabolism
pmb00061  Fatty acid biosynthesis
pmb00071  Fatty acid degradation
pmb00190  Oxidative phosphorylation
pmb00220  Arginine biosynthesis
pmb00250  Alanine, aspartate and glutamate metabolism
pmb00280  Valine, leucine and isoleucine degradation
pmb00350  Tyrosine metabolism
pmb00470  D-Amino acid metabolism
pmb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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