KEGG   PATHWAY: pmc00020
Entry
pmc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Prochlorococcus marinus MIT 9515
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmc00020  Citrate cycle (TCA cycle)
pmc00020

Module
pmc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmc00020]
pmc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmc00020]
Other DBs
GO: 0006099
Organism
Prochlorococcus marinus MIT 9515 [GN:pmc]
Gene
P9515_01901  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
P9515_18911  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
P9515_17831  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P9515_14591  lpd; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P9515_16461  fumC; Fumarate lyase [KO:K01679] [EC:4.2.1.2]
P9515_04801  mqo; putative malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
P9515_14491  acoA; Pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
P9515_10131  pdhB; Pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
P9515_04661  pdhC; Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmc00010  Glycolysis / Gluconeogenesis
pmc00053  Ascorbate and aldarate metabolism
pmc00061  Fatty acid biosynthesis
pmc00071  Fatty acid degradation
pmc00190  Oxidative phosphorylation
pmc00220  Arginine biosynthesis
pmc00250  Alanine, aspartate and glutamate metabolism
pmc00280  Valine, leucine and isoleucine degradation
pmc00350  Tyrosine metabolism
pmc00470  D-Amino acid metabolism
pmc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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