KEGG   PATHWAY: pmer03440
Entry
pmer03440                   Pathway                                
Name
Homologous recombination - Parabacteroides merdae
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
pmer03440  Homologous recombination
pmer03440

Other DBs
GO: 0000724
Organism
Parabacteroides merdae [GN:pmer]
Gene
INE87_01013  recJ; Single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
INE87_03834  Single-strand binding protein family protein [KO:K03111]
INE87_04035  Single-strand binding protein family protein [KO:K03111]
INE87_03924  recF; DNA replication and repair protein RecF [KO:K03629]
INE87_02107  Recombination protein O C terminal [KO:K03584]
INE87_00992  recR; Recombination protein RecR [KO:K06187]
INE87_00057  recA; Protein RecA [KO:K03553]
INE87_02649  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
INE87_03368  ruvA; Holliday junction ATP-dependent DNA helicase RuvA [KO:K03550]
INE87_02682  ruvB; Holliday junction ATP-dependent DNA helicase RuvB [KO:K03551] [EC:5.6.2.4]
INE87_03536  ruvC; Crossover junction endodeoxyribonuclease RuvC [KO:K01159] [EC:3.1.21.10]
INE87_00591  SNF2 family N-terminal domain protein [KO:K03655] [EC:5.6.2.4]
INE87_00870  Putative ATP-dependent DNA helicase recG C-terminal [KO:K03655] [EC:5.6.2.4]
INE87_00921  Putative ATP-dependent DNA helicase recG C-terminal [KO:K03655] [EC:5.6.2.4]
INE87_02300  recG; ATP-dependent DNA helicase RecG [KO:K03655] [EC:5.6.2.4]
INE87_03782  Putative ATP-dependent DNA helicase recG C-terminal [KO:K03655] [EC:5.6.2.4]
INE87_02173  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
INE87_00506  dnaN_1; Beta sliding clamp [KO:K02338] [EC:2.7.7.7]
INE87_00536  dnaN_2; Beta sliding clamp [KO:K02338] [EC:2.7.7.7]
INE87_03735  DNA polymerase III, delta subunit [KO:K02343] [EC:2.7.7.7]
INE87_00642  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
INE87_01044  DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
INE87_00507  Exonuclease [KO:K02342] [EC:2.7.7.7]
INE87_02314  polC; DNA polymerase III PolC-type [KO:K02342] [EC:2.7.7.7]
INE87_03485  3'DNA-binding domain (3'BD) [KO:K04066] [EC:5.6.2.4]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   
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