KEGG   PATHWAY: pmf00020
Entry
pmf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Prochlorococcus marinus MIT 9303
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmf00020  Citrate cycle (TCA cycle)
pmf00020

Module
pmf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmf00020]
pmf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmf00020]
Other DBs
GO: 0006099
Organism
Prochlorococcus marinus MIT 9303 [GN:pmf]
Gene
P9303_26921  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
P9303_29981  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
P9303_25761  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P9303_19781  lpd; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P9303_01691  sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P9303_01701  sdhB; succinate dehydrogenase/fumarate reductase, iron-sulfur binding [KO:K00240] [EC:1.3.5.1]
P9303_01681  Succinate dehydrogenase [KO:K00241]
P9303_04621  fumC; Fumarate lyase [KO:K01679] [EC:4.2.1.2]
P9303_20971  mqo; putative malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
P9303_19591  acoA; Pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
P9303_16211  pdhB; Pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
P9303_21291  pdhC; Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
P9303_17211  Putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmf00010  Glycolysis / Gluconeogenesis
pmf00053  Ascorbate and aldarate metabolism
pmf00061  Fatty acid biosynthesis
pmf00071  Fatty acid degradation
pmf00190  Oxidative phosphorylation
pmf00220  Arginine biosynthesis
pmf00250  Alanine, aspartate and glutamate metabolism
pmf00280  Valine, leucine and isoleucine degradation
pmf00350  Tyrosine metabolism
pmf00470  D-Amino acid metabolism
pmf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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