KEGG   PATHWAY: pmt00020
Entry
pmt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Prochlorococcus marinus MIT 9313
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmt00020  Citrate cycle (TCA cycle)
pmt00020

Module
pmt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmt00020]
pmt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmt00020]
Other DBs
GO: 0006099
Organism
Prochlorococcus marinus MIT 9313 [GN:pmt]
Gene
PMT_2021  Citrate synthase [KO:K01647] [EC:2.3.3.1]
PMT_2249  Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PMT_1935  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PMT_0335  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PMT_0132  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PMT_0133  succinate dehydrogenase/fumarate reductase, iron-sulfur binding [KO:K00240] [EC:1.3.5.1]
PMT_0131  hypothetical [KO:K00241]
PMT_1485  Fumarate lyase [KO:K01679] [EC:4.2.1.2]
PMT_0255  putative malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PMT_0347  Pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
PMT_0618  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
PMT_0220  Dihydrolipoamide S-acetyltransferase component (E2), pyruvate de [KO:K00627] [EC:2.3.1.12]
PMT_0541  Putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmt00010  Glycolysis / Gluconeogenesis
pmt00053  Ascorbate and aldarate metabolism
pmt00061  Fatty acid biosynthesis
pmt00071  Fatty acid degradation
pmt00190  Oxidative phosphorylation
pmt00220  Arginine biosynthesis
pmt00250  Alanine, aspartate and glutamate metabolism
pmt00280  Valine, leucine and isoleucine degradation
pmt00350  Tyrosine metabolism
pmt00470  D-Amino acid metabolism
pmt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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