KEGG   PATHWAY: pmy01100
Entry
pmy01100                    Pathway                                
Name
Metabolic pathways - Pseudomonas mendocina ymp
Class
Pathway map
pmy01100  Metabolic pathways
pmy01100

Module
pmy_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pmy01100]
pmy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmy01100]
pmy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pmy01100]
pmy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pmy01100]
pmy_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pmy01100]
pmy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmy01100]
pmy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmy01100]
pmy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmy01100]
pmy_M00015  Proline biosynthesis, glutamate => proline [PATH:pmy01100]
pmy_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:pmy01100]
pmy_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pmy01100]
pmy_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:pmy01100]
pmy_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pmy01100]
pmy_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pmy01100]
pmy_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:pmy01100]
pmy_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:pmy01100]
pmy_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:pmy01100]
pmy_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:pmy01100]
pmy_M00040  Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH:pmy01100]
pmy_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:pmy01100]
pmy_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:pmy01100]
pmy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pmy01100]
pmy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pmy01100]
pmy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pmy01100]
pmy_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pmy01100]
pmy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pmy01100]
pmy_M00063  CMP-KDO biosynthesis [PATH:pmy01100]
pmy_M00082  Fatty acid biosynthesis, initiation [PATH:pmy01100]
pmy_M00083  Fatty acid biosynthesis, elongation [PATH:pmy01100]
pmy_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:pmy01100]
pmy_M00087  beta-Oxidation [PATH:pmy01100]
pmy_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:pmy01100]
pmy_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pmy01100]
pmy_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pmy01100]
pmy_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:pmy01100]
pmy_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:pmy01100]
pmy_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pmy01100]
pmy_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pmy01100]
pmy_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pmy01100]
pmy_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pmy01100]
pmy_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pmy01100]
pmy_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:pmy01100]
pmy_M00149  Succinate dehydrogenase, prokaryotes [PATH:pmy01100]
pmy_M00151  Cytochrome bc1 complex respiratory unit [PATH:pmy01100]
pmy_M00155  Cytochrome c oxidase, prokaryotes [PATH:pmy01100]
pmy_M00156  Cytochrome c oxidase, cbb3-type [PATH:pmy01100]
pmy_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pmy01100]
pmy_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pmy01100]
pmy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmy01100]
pmy_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:pmy01100]
pmy_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:pmy01100]
pmy_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pmy01100]
pmy_M00555  Betaine biosynthesis, choline => betaine [PATH:pmy01100]
pmy_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:pmy01100]
pmy_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pmy01100]
pmy_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:pmy01100]
pmy_M00621  Glycine cleavage system [PATH:pmy01100]
pmy_M00793  dTDP-L-rhamnose biosynthesis [PATH:pmy01100]
pmy_M00844  Arginine biosynthesis, ornithine => arginine [PATH:pmy01100]
pmy_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pmy01100]
pmy_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:pmy01100]
pmy_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:pmy01100]
pmy_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pmy01100]
pmy_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pmy01100]
pmy_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pmy01100]
pmy_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pmy01100]
pmy_M00947  D-Arginine racemization, D-arginine => L-arginine [PATH:pmy01100]
pmy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pmy01100]
pmy_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pmy01100]
pmy_M00970  Proline degradation, proline => glutamate [PATH:pmy01100]
pmy_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:pmy01100]
Organism
Pseudomonas mendocina ymp [GN:pmy]
Related
pathway
pmy00010  Glycolysis / Gluconeogenesis
pmy00020  Citrate cycle (TCA cycle)
pmy00030  Pentose phosphate pathway
pmy00040  Pentose and glucuronate interconversions
pmy00051  Fructose and mannose metabolism
pmy00052  Galactose metabolism
pmy00053  Ascorbate and aldarate metabolism
pmy00061  Fatty acid biosynthesis
pmy00071  Fatty acid degradation
pmy00074  Mycolic acid biosynthesis
pmy00130  Ubiquinone and other terpenoid-quinone biosynthesis
pmy00190  Oxidative phosphorylation
pmy00220  Arginine biosynthesis
pmy00230  Purine metabolism
pmy00240  Pyrimidine metabolism
pmy00250  Alanine, aspartate and glutamate metabolism
pmy00260  Glycine, serine and threonine metabolism
pmy00261  Monobactam biosynthesis
pmy00270  Cysteine and methionine metabolism
pmy00280  Valine, leucine and isoleucine degradation
pmy00290  Valine, leucine and isoleucine biosynthesis
pmy00300  Lysine biosynthesis
pmy00310  Lysine degradation
pmy00330  Arginine and proline metabolism
pmy00332  Carbapenem biosynthesis
pmy00340  Histidine metabolism
pmy00350  Tyrosine metabolism
pmy00360  Phenylalanine metabolism
pmy00362  Benzoate degradation
pmy00380  Tryptophan metabolism
pmy00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pmy00401  Novobiocin biosynthesis
pmy00410  beta-Alanine metabolism
pmy00430  Taurine and hypotaurine metabolism
pmy00440  Phosphonate and phosphinate metabolism
pmy00450  Selenocompound metabolism
pmy00460  Cyanoamino acid metabolism
pmy00470  D-Amino acid metabolism
pmy00480  Glutathione metabolism
pmy00500  Starch and sucrose metabolism
pmy00520  Amino sugar and nucleotide sugar metabolism
pmy00521  Streptomycin biosynthesis
pmy00523  Polyketide sugar unit biosynthesis
pmy00525  Acarbose and validamycin biosynthesis
pmy00540  Lipopolysaccharide biosynthesis
pmy00541  O-Antigen nucleotide sugar biosynthesis
pmy00543  Exopolysaccharide biosynthesis
pmy00550  Peptidoglycan biosynthesis
pmy00552  Teichoic acid biosynthesis
pmy00561  Glycerolipid metabolism
pmy00562  Inositol phosphate metabolism
pmy00564  Glycerophospholipid metabolism
pmy00565  Ether lipid metabolism
pmy00592  alpha-Linolenic acid metabolism
pmy00620  Pyruvate metabolism
pmy00625  Chloroalkane and chloroalkene degradation
pmy00626  Naphthalene degradation
pmy00627  Aminobenzoate degradation
pmy00630  Glyoxylate and dicarboxylate metabolism
pmy00633  Nitrotoluene degradation
pmy00640  Propanoate metabolism
pmy00643  Styrene degradation
pmy00650  Butanoate metabolism
pmy00660  C5-Branched dibasic acid metabolism
pmy00670  One carbon pool by folate
pmy00680  Methane metabolism
pmy00710  Carbon fixation by Calvin cycle
pmy00720  Other carbon fixation pathways
pmy00730  Thiamine metabolism
pmy00740  Riboflavin metabolism
pmy00750  Vitamin B6 metabolism
pmy00760  Nicotinate and nicotinamide metabolism
pmy00770  Pantothenate and CoA biosynthesis
pmy00780  Biotin metabolism
pmy00785  Lipoic acid metabolism
pmy00790  Folate biosynthesis
pmy00791  Atrazine degradation
pmy00860  Porphyrin metabolism
pmy00900  Terpenoid backbone biosynthesis
pmy00903  Limonene degradation
pmy00907  Pinene, camphor and geraniol degradation
pmy00910  Nitrogen metabolism
pmy00920  Sulfur metabolism
pmy00930  Caprolactam degradation
pmy00946  Degradation of flavonoids
pmy00999  Biosynthesis of various plant secondary metabolites
pmy01040  Biosynthesis of unsaturated fatty acids
pmy01055  Biosynthesis of vancomycin group antibiotics
KO pathway
ko01100   
LinkDB

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