KEGG   PATHWAY: pmy00230
Entry
pmy00230                    Pathway                                
Name
Purine metabolism - Pseudomonas mendocina ymp
Class
Metabolism; Nucleotide metabolism
Pathway map
pmy00230  Purine metabolism
pmy00230

Module
pmy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pmy00230]
pmy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pmy00230]
pmy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pmy00230]
pmy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pmy00230]
pmy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pmy00230]
pmy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pmy00230]
pmy_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:pmy00230]
Other DBs
GO: 0006163 0042278
Organism
Pseudomonas mendocina ymp [GN:pmy]
Gene
Pmen_0608  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
Pmen_0393  NUDIX hydrolase [KO:K08312] [EC:3.6.1.-]
Pmen_4379  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Pmen_1055  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Pmen_2711  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
Pmen_0707  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
Pmen_2997  formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
Pmen_3406  formate-dependent phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
Pmen_3414  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
Pmen_2996  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
Pmen_0118  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
Pmen_0119  5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
Pmen_1665  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
Pmen_2402  Adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
Pmen_0708  phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
Pmen_2616  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
Pmen_2548  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
Pmen_1038  metallophosphoesterase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Pmen_3024  3'-nucleotidase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Pmen_0392  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K20881] [EC:3.1.3.-]
Pmen_2513  protein of unknown function DUF1255 [KO:K09913] [EC:2.4.2.1 2.4.2.2]
Pmen_0970  protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Pmen_0947  phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
Pmen_3486  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
Pmen_3504  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Pmen_4158  non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
Pmen_0251  xanthine phosphoribosyltransferase [KO:K03816] [EC:2.4.2.22]
Pmen_2751  molybdopterin dehydrogenase, FAD-binding protein [KO:K13481] [EC:1.17.1.4]
Pmen_2752  Xanthine oxidase [KO:K13482] [EC:1.17.1.4]
Pmen_2345  xanthine dehydrogenase, molybdenum binding subunit apoprotein [KO:K11177] [EC:1.17.1.4]
Pmen_2346  molybdopterin dehydrogenase, FAD-binding protein [KO:K11178] [EC:1.17.1.4]
Pmen_2347  (2Fe-2S)-binding domain protein [KO:K13483]
Pmen_3485  GMP synthase (glutamine-hydrolyzing) [KO:K01951] [EC:6.3.5.2]
Pmen_2011  glutamine amidotransferase class-I [KO:K01951] [EC:6.3.5.2]
Pmen_2754  amidohydrolase [KO:K01487] [EC:3.5.4.3]
Pmen_4388  guanylate kinase [KO:K00942] [EC:2.7.4.8]
Pmen_3151  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
Pmen_3152  Ribonucleoside-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
Pmen_3004  putative deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
Pmen_3991  hypothetical protein [KO:K06952] [EC:3.1.3.89]
Pmen_4390  (p)ppGpp synthetase I, SpoT/RelA [KO:K01139] [EC:2.7.6.5 3.1.7.2]
Pmen_0301  Ppx/GppA phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
Pmen_1735  (p)ppGpp synthetase I, SpoT/RelA [KO:K00951] [EC:2.7.6.5]
Pmen_1823  putative adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
Pmen_0273  adenylate cyclase [KO:K05851] [EC:4.6.1.1]
Pmen_0641  Adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
Pmen_3750  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
Pmen_0422  conserved hypothetical protein 730 [KO:K06966] [EC:3.2.2.10 3.2.2.-]
Pmen_3706  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
Pmen_3359  Adenylate kinase [KO:K00939] [EC:2.7.4.3]
Pmen_1736  MazG family protein [KO:K04765] [EC:3.6.1.9]
Pmen_0606  Calcineurin phosphoesterase C-terminal domain protein [KO:K03651] [EC:3.1.4.53]
Pmen_4015  bis(5'nucleosyl)-tetraphosphatase, ApaH [KO:K01525] [EC:3.6.1.41]
Pmen_0891  sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
Pmen_1862  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
Pmen_0890  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Pmen_2757  Transthyretin [KO:K07127] [EC:3.5.2.17]
Pmen_2759  conserved hypothetical protein [KO:K13485] [EC:4.1.1.97]
Pmen_2758  Chitin deacetylase [KO:K16842] [EC:3.5.2.5]
Pmen_1325  protein of unknown function DUF861, cupin_3 [KO:K14977] [EC:3.5.3.26]
Pmen_2760  Ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
Pmen_0302  Ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
Pmen_0692  urease, Metallo peptidase, MEROPS family M38 [KO:K01428] [EC:3.5.1.5]
Pmen_0693  urease, beta subunit [KO:K01429] [EC:3.5.1.5]
Pmen_0695  urease, gamma subunit [KO:K01430] [EC:3.5.1.5]
Pmen_3832  Gamma-glutamyltransferase [KO:K22602] [EC:3.5.1.126]
Pmen_1106  carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
pmy00030  Pentose phosphate pathway
pmy00220  Arginine biosynthesis
pmy00250  Alanine, aspartate and glutamate metabolism
pmy00260  Glycine, serine and threonine metabolism
pmy00340  Histidine metabolism
pmy00630  Glyoxylate and dicarboxylate metabolism
pmy00730  Thiamine metabolism
pmy00740  Riboflavin metabolism
pmy00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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