KEGG   PATHWAY: pmy00630
Entry
pmy00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas mendocina ymp
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmy00630  Glyoxylate and dicarboxylate metabolism
pmy00630

Module
pmy_M00621  Glycine cleavage system [PATH:pmy00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas mendocina ymp [GN:pmy]
Gene
Pmen_2407  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Pmen_3109  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Pmen_3595  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Pmen_4096  malate synthase G [KO:K01638] [EC:2.3.3.9]
Pmen_0199  malate synthase G [KO:K01638] [EC:2.3.3.9]
Pmen_2508  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pmen_1903  aconitase [KO:K01681] [EC:4.2.1.3]
Pmen_2578  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Pmen_3662  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_3820  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_3597  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_1138  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_2591  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_2036  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_1725  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pmen_0745  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Pmen_1493  MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]
Pmen_0203  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Pmen_0202  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Pmen_0201  protein of unknown function DUF224, cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Pmen_2273  Catalase [KO:K03781] [EC:1.11.1.6]
Pmen_3664  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
Pmen_3998  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Pmen_1621  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
Pmen_4457  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Pmen_4140  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pmen_0341  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pmen_2858  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pmen_0342  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pmen_0676  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pmen_3468  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pmen_2634  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pmen_4366  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pmen_4525  glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Pmen_1344  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pmen_4132  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pmen_0759  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pmen_1345  glycine dehydrogenase (decarboxylating) alpha subunit [KO:K00281] [EC:1.4.4.2]
Pmen_0331  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Pmen_1343  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Pmen_3460  glycine cleavage T protein (aminomethyl transferase) [KO:K00605] [EC:2.1.2.10]
Pmen_3456  glycine cleavage T protein (aminomethyl transferase) [KO:K00605] [EC:2.1.2.10]
Pmen_1104  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pmen_2501  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pmen_1346  glycine cleavage system H protein [KO:K02437]
Pmen_0332  glycine cleavage system H protein [KO:K02437]
Pmen_2769  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Pmen_3195  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Pmen_2770  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Pmen_2771  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Pmen_1439  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
Pmen_2772  glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
Pmen_3141  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pmen_0390  formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
Pmen_0389  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Pmen_0388  formate dehydrogenase beta subunit [KO:K00124]
Pmen_0387  formate dehydrogenase gamma subunit [KO:K00127]
Pmen_3312  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Pmen_4127  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Pmen_3457  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Pmen_3470  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pmy00010  Glycolysis / Gluconeogenesis
pmy00020  Citrate cycle (TCA cycle)
pmy00030  Pentose phosphate pathway
pmy00053  Ascorbate and aldarate metabolism
pmy00071  Fatty acid degradation
pmy00230  Purine metabolism
pmy00250  Alanine, aspartate and glutamate metabolism
pmy00260  Glycine, serine and threonine metabolism
pmy00620  Pyruvate metabolism
pmy00750  Vitamin B6 metabolism
pmy00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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