KEGG   PATHWAY: pory03430
Entry
pory03430                   Pathway                                
Name
Mismatch repair - Pseudomonas oryziphila
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pory03430  Mismatch repair
pory03430

Other DBs
GO: 0006298
Organism
Pseudomonas oryziphila [GN:pory]
Gene
EJA05_21880  mutS; DNA mismatch repair protein MutS [KO:K03555]
EJA05_25475  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
EJA05_27870  DNA helicase II [KO:K03657] [EC:5.6.2.4]
EJA05_02125  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
EJA05_23325  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
EJA05_22415  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
EJA05_03130  exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
EJA05_22190  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
EJA05_17580  single-stranded DNA-binding protein [KO:K03111]
EJA05_21165  single-stranded DNA-binding protein [KO:K03111]
EJA05_02700  ssb; single-stranded DNA-binding protein [KO:K03111]
EJA05_21970  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
EJA05_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
EJA05_19705  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
EJA05_03365  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
EJA05_08165  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
EJA05_19140  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
EJA05_01915  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EJA05_22645  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
EJA05_19740  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
EJA05_25845  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
EJA05_09485  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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