KEGG   PATHWAY: ppad03008
Entry
ppad03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Panthera pardus (leopard)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ppad03008  Ribosome biogenesis in eukaryotes
ppad03008

Organism
Panthera pardus (leopard) [GN:ppad]
Gene
109260518  CSNK2B; casein kinase II subunit beta [KO:K03115]
109272621  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
109270846  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
109252033  NOL6; nucleolar protein 6 [KO:K14544]
109265664  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
109266464  WDR43; WD repeat-containing protein 43 [KO:K14546]
109270709  UTP4; U3 small nucleolar RNA-associated protein 4 homolog isoform X1 [KO:K14548]
109275007  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
109248863  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
109274413  WDR75; WD repeat-containing protein 75 isoform X1 [KO:K14552]
109247264  UTP18; U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [KO:K14553]
109267610  WDR36; WD repeat-containing protein 36 [KO:K14554]
109278137  TBL3; transducin beta-like protein 3 isoform X1 [KO:K14555]
109272153  WDR3; WD repeat-containing protein 3 [KO:K14556]
109251893  UTP6; U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
109256946  PWP2; periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
109273318  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
109262662  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
109259120  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109275957  TCOF1; treacle protein isoform X1 [KO:K14562]
109267462  rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
109256603  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
109274797  NOP56; nucleolar protein 56 isoform X1 [KO:K14564]
109259197  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
109265638  SNU13; NHP2-like protein 1 isoform X1 [KO:K12845]
109260940  DKC1; H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
109278942  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
109248089  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
109258488  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
109253835  FCF1; rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
109253763  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
109267749  DROSHA; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
109276093  EMG1; ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
109264620  BMS1; ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
109279164  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
109275488  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
109278034  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
109273694  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
109251562  POP4; ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
109277523  POP5; ribonuclease P/MRP protein subunit POP5 isoform X1 [KO:K03537] [EC:3.1.26.5]
109262677  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
109252018  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
109251303  POP7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
109264637  RPP30; ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
109249445  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
109257703  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
109252070  putative exonuclease GOR [KO:K14570] [EC:3.1.-.-]
109255526  putative RNA exonuclease NEF-sp [KO:K14570] [EC:3.1.-.-]
109278620  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
109260339  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
109274657  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
109273812  GTPBP4; nucleolar GTP-binding protein 1 [KO:K06943]
109255481  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
109259219  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
109247911  GNL3; guanine nucleotide-binding protein-like 3 isoform X1 [KO:K14538]
109258904  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
109263406  MDN1; midasin isoform X1 [KO:K14572]
109268946  RBM28; RNA-binding protein 28 isoform X1 [KO:K14573]
109270695  NOB1; RNA-binding protein NOB1 [KO:K11883]
109257606  RAN; GTP-binding nuclear protein Ran [KO:K07936]
109256130  XPO1; exportin-1 isoform X1 [KO:K14290]
109262071  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
109246606  NXF1; nuclear RNA export factor 1 [KO:K14284]
109261037  nuclear RNA export factor 2-like [KO:K14284]
109260347  LOW QUALITY PROTEIN: nuclear RNA export factor 2-like [KO:K14284]
109260364  nuclear RNA export factor 2-like [KO:K14284]
109274648  NXT1; NTF2-related export protein 1 [KO:K14285]
109253664  NXT2; NTF2-related export protein 2 isoform X1 [KO:K14285]
109272517  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
109250646  SBDS; ribosome maturation protein SBDS [KO:K14574]
109273535  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
109266574  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
109248930  SPATA5; spermatogenesis-associated protein 5 isoform X1 [KO:K14575]
109275047  AK6; adenylate kinase isoenzyme 6 isoform X1 [KO:K18532] [EC:2.7.4.3]
109249427  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
109254722  RIOK2; serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ppad03010  Ribosome
KO pathway
ko03008   
LinkDB

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