KEGG   PATHWAY: ppio00020
Entry
ppio00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pyramidobacter piscolens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppio00020  Citrate cycle (TCA cycle)
ppio00020

Module
ppio_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppio00020]
ppio_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppio00020]
Other DBs
GO: 0006099
Organism
Pyramidobacter piscolens [GN:ppio]
Gene
CE91St28_23220  hydratase [KO:K01681] [EC:4.2.1.3]
CE91St28_03120  acoL_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St28_03350  acoL_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St28_18830  acoL_3; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St28_16490  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CE91St28_18240  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CE91St28_16480  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CE91St28_18230  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CE91St28_16470  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CE91St28_18220  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CE91St28_16500  2-oxoacid:acceptor oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
CE91St28_18250  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
CE91St28_01960  cat1; acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CE91St28_07080  hypothetical protein [KO:K00239] [EC:1.3.5.1]
CE91St28_07070  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CE91St28_12840  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CE91St28_02080  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
CE91St28_17380  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
CE91St28_04400  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CE91St28_03280  acoC_1; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
CE91St28_18840  acoC_2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CE91St28_02020  2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
CE91St28_02010  pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
CE91St28_02040  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
CE91St28_02030  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
CE91St28_16520  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CE91St28_19360  nifJ2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppio00010  Glycolysis / Gluconeogenesis
ppio00061  Fatty acid biosynthesis
ppio00071  Fatty acid degradation
ppio00190  Oxidative phosphorylation
ppio00220  Arginine biosynthesis
ppio00250  Alanine, aspartate and glutamate metabolism
ppio00280  Valine, leucine and isoleucine degradation
ppio00350  Tyrosine metabolism
ppio00470  D-Amino acid metabolism
ppio00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system