KEGG   PATHWAY: ppsy02025
Entry
ppsy02025                   Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas versuta
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
ppsy02025  Biofilm formation - Pseudomonas aeruginosa
ppsy02025

Organism
Pseudomonas versuta [GN:ppsy]
Gene
AOC04_21685  chemotaxis protein [KO:K02660]
AOC04_21680  protein PilI [KO:K02659]
AOC04_21695  chemotaxis protein [KO:K06598]
AOC04_21675  chemotaxis protein CheY [KO:K02658]
AOC04_21670  pilus assembly protein PilG [KO:K02657]
AOC04_18210  serine/threonine protein phosphatase [KO:K03651] [EC:3.1.4.53]
AOC04_22480  cyclic AMP receptor protein [KO:K10914]
AOC04_12725  AAA family ATPase [KO:K10941]
AOC04_22455  anthranilate synthase [KO:K01657] [EC:4.1.3.27]
AOC04_22460  anthranilate synthase [KO:K01658] [EC:4.1.3.27]
AOC04_02565  chemotaxis protein CheY [KO:K07678] [EC:2.7.13.3]
AOC04_00070  histidine kinase [KO:K20971]
AOC04_17705  histidine kinase [KO:K20972]
AOC04_06550  chemotaxis protein CheY [KO:K07689]
AOC04_07275  carbon storage regulator CsrA [KO:K03563]
AOC04_10840  carbon storage regulator CsrA [KO:K03563]
AOC04_14420  carbon storage regulator [KO:K03563]
AOC04_03620  histidine kinase [KO:K20973] [EC:2.7.13.3]
AOC04_13235  histidine kinase [KO:K20974] [EC:2.7.13.3]
AOC04_12670  histidine kinase [KO:K20976]
AOC04_12675  chemotaxis protein CheY [KO:K20977]
AOC04_12680  anti-anti-sigma factor [KO:K20978]
AOC04_14190  flagellar biosynthesis protein FlgM [KO:K02398]
AOC04_12595  fliA; flagellar biosynthesis sigma factor [KO:K02405]
AOC04_06985  type VI secretion protein VasK [KO:K11891]
AOC04_10975  type VI secretion protein VasK [KO:K11891]
AOC04_04015  hypothetical protein [KO:K11891]
AOC04_11030  type VI secretion protein [KO:K11893]
AOC04_04005  type VI secretion protein [KO:K11893]
AOC04_03930  type VI secretion system protein ImpA [KO:K11902]
AOC04_03935  hypothetical protein [KO:K11901]
AOC04_11035  EvpB family type VI secretion protein [KO:K11900]
AOC04_03940  EvpB family type VI secretion protein [KO:K11900]
AOC04_11015  Hcp family T6SS protein CtsH1 [KO:K11903]
AOC04_03945  hypothetical protein [KO:K11903]
AOC04_03960  hypothetical protein [KO:K11895]
AOC04_11010  ATPase [KO:K11907]
AOC04_03965  molecular chaperone [KO:K11907]
AOC04_15365  chemotaxis protein [KO:K13487]
AOC04_15345  chemotaxis protein CheA [KO:K13490]
AOC04_15360  chemotaxis protein CheW [KO:K13488]
AOC04_15350  chemotaxis protein CheW [KO:K13489]
AOC04_15340  chemotaxis protein CheY [KO:K13491] [EC:3.1.1.61]
AOC04_15335  diguanylate cyclase [KO:K11444] [EC:2.7.7.65]
AOC04_17310  diguanylate cyclase [KO:K21021] [EC:2.7.7.65]
AOC04_10170  histidine kinase [KO:K21023] [EC:2.7.7.65]
AOC04_02370  diguanylate cyclase [KO:K21024] [EC:3.1.4.52]
AOC04_03705  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
AOC04_15785  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
AOC04_15740  hemolysin D [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
ppsy02024  Quorum sensing
ppsy02040  Flagellar assembly
ppsy03070  Bacterial secretion system
KO pathway
ko02025   
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