KEGG   PATHWAY: ptrl00630
Entry
ptrl00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas triclosanedens
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptrl00630  Glyoxylate and dicarboxylate metabolism
ptrl00630

Module
ptrl_M00621  Glycine cleavage system [PATH:ptrl00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas triclosanedens [GN:ptrl]
Gene
OU419_17160  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
OU419_09540  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
OU419_12910  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
OU419_24135  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
OU419_02645  malate synthase G [KO:K01638] [EC:2.3.3.9]
OU419_17415  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
OU419_18340  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
OU419_11965  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OU419_11690  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OU419_12920  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
OU419_13580  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OU419_23030  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
OU419_24655  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OU419_07990  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
OU419_03465  katA; catalase KatA [KO:K03781] [EC:1.11.1.6]
OU419_13490  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
OU419_14310  katE; catalase HPII [KO:K03781] [EC:1.11.1.6]
OU419_22660  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
OU419_23050  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
OU419_02970  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
OU419_19450  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
OU419_00615  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
OU419_02775  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OU419_09735  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OU419_10330  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
OU419_18285  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OU419_26455  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
OU419_27275  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OU419_27285  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OU419_28370  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OU419_04710  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
OU419_06885  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
OU419_28145  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
OU419_01890  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
OU419_01880  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
OU419_12280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OU419_13065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OU419_17380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OU419_01885  gcvH; glycine cleavage system protein GcvH [KO:K02437]
OU419_24710  glycine cleavage system protein H [KO:K02437]
OU419_10555  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
OU419_07925  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
OU419_10550  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
OU419_10545  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
OU419_07750  glycerate kinase [KO:K00865] [EC:2.7.1.165]
OU419_10540  glycerate kinase [KO:K11529] [EC:2.7.1.165]
OU419_07440  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
OU419_20140  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
OU419_20275  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
OU419_24765  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
OU419_24760  fdxH; formate dehydrogenase subunit beta [KO:K00124]
OU419_24755  formate dehydrogenase subunit gamma [KO:K00127]
OU419_23190  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
OU419_28170  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
OU419_26340  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ptrl00010  Glycolysis / Gluconeogenesis
ptrl00020  Citrate cycle (TCA cycle)
ptrl00030  Pentose phosphate pathway
ptrl00053  Ascorbate and aldarate metabolism
ptrl00071  Fatty acid degradation
ptrl00230  Purine metabolism
ptrl00250  Alanine, aspartate and glutamate metabolism
ptrl00260  Glycine, serine and threonine metabolism
ptrl00620  Pyruvate metabolism
ptrl00710  Carbon fixation by Calvin cycle
ptrl00750  Vitamin B6 metabolism
ptrl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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