KEGG   PATHWAY: pyw03030
Entry
pyw03030                    Pathway                                
Name
DNA replication - Pyrobaculum sp. WP30
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pyw03030  DNA replication
pyw03030

Organism
Pyrobaculum sp. WP30 [GN:pyw]
Gene
PYWP30_01403  DNA primase (bacterial type) [KO:K02316] [EC:2.7.7.101]
PYWP30_00804  Ribonuclease HI [KO:K03469] [EC:3.1.26.4]
PYWP30_00321  RNase HII [KO:K03470] [EC:3.1.26.4]
PYWP30_01402  replicative DNA polymerase I [KO:K02319] [EC:2.7.7.7]
PYWP30_01441  replicative DNA polymerase I [KO:K02319] [EC:2.7.7.7]
PYWP30_00231  hypothetical protein [KO:K02319] [EC:2.7.7.7]
PYWP30_00116  replicative DNA helicase Mcm [KO:K10726] [EC:5.6.2.3]
PYWP30_01811  DNA primase small subunit [KO:K02683] [EC:2.7.7.102]
PYWP30_01483  DNA primase large subunit [KO:K18882]
PYWP30_02264  DNA polymerase sliding clamp subunit (PCNA-like) [KO:K04802]
PYWP30_01810  monomeric archaeal DNA polymerase sliding clamp [KO:K04802]
PYWP30_02276  replication factor C small subunit [KO:K04801]
PYWP30_00735  replication factor C small subunit [KO:K04801]
PYWP30_02277  replication factor C large subunit [KO:K04800]
PYWP30_02250  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
PYWP30_00076  DNA ligase I, ATP-dependent (dnl1) [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system