KEGG   PATHWAY: rag03018
Entry
rag03018                    Pathway                                
Name
RNA degradation - Riemerella anatipestifer RA-CH-1
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
rag03018  RNA degradation
rag03018

Other DBs
GO: 0006401
Organism
Riemerella anatipestifer RA-CH-1 [GN:rag]
Gene
B739_0997  Enolase [KO:K01689] [EC:4.2.1.11]
B739_1254  Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [KO:K00962] [EC:2.7.7.8]
B739_1562  Superfamily II DNA and RNA helicase [KO:K11927] [EC:5.6.2.7]
B739_1629  Superfamily II DNA and RNA helicase [KO:K11927] [EC:5.6.2.7]
B739_0712  hypothetical protein [KO:K12573] [EC:3.1.13.1]
B739_1765  Superfamily II DNA and RNA helicase [KO:K05592] [EC:5.6.2.7]
B739_1251  Superfamily II DNA helicase [KO:K03654] [EC:5.6.2.4]
B739_2025  Superfamily II DNA helicase [KO:K03654] [EC:5.6.2.4]
B739_0394  Transcription termination factor [KO:K03628]
B739_1868  putative HD superfamily hydrolase [KO:K18682] [EC:3.1.-.-]
B739_1344  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
B739_1551  Molecular chaperone [KO:K04043]
B739_2165  hypothetical protein [KO:K04043]
B739_1700  Chaperonin GroEL (HSP60 family) [KO:K04077] [EC:5.6.1.7]
B739_1413  Polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
B739_1539  hypothetical protein [KO:K22468] [EC:2.7.4.34]
B739_1538  hypothetical protein [KO:K22468] [EC:2.7.4.34]
B739_0040  hypothetical protein [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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