KEGG   PATHWAY: rhi03030
Entry
rhi03030                    Pathway                                
Name
DNA replication - Sinorhizobium fredii NGR234
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rhi03030  DNA replication
rhi03030

Organism
Sinorhizobium fredii NGR234 [GN:rhi]
Gene
NGR_c33540  dnaQ; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
NGR_c10730  dnaE2; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
NGR_c35580  dnaX; DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
NGR_c16060  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
NGR_c33410  DNA polymerase III, delta subunit protein [KO:K02340] [EC:2.7.7.7]
NGR_c09050  DNA polymerase III, chi subunit protein [KO:K02339] [EC:2.7.7.7]
NGR_c36750  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
NGR_c08820  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
NGR_c22720  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
NGR_c15580  ssDNA-binding protein [KO:K03111]
NGR_c05350  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
NGR_c11280  putative ribonuclease HI [KO:K03469] [EC:3.1.26.4]
NGR_c04520  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
NGR_c35150  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
NGR_c20970  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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