KEGG   PATHWAY: riu02020
Entry
riu02020                    Pathway                                
Name
Two-component system - Rahnella inusitata
Description
Two-component signal transduction systems enable bacteria to sense, respond, and adapt to changes in their environment or in their intracellular state. Each two-component system consists of a sensor protein-histidine kinase (HK) and a response regulator (RR). In the prototypical two-component pathway, the sensor HK phosphorylates its own conserved His residue in response to a signal(s) in the environment. Subsequently, the phosphoryl group of HK is transferred onto a specific Asp residue on the RR. The activated RR can then effect changes in cellular physiology, often by regulating gene expression. Two-component pathways thus often enable cells to sense and respond to stimuli by inducing changes in transcription.
Class
Environmental Information Processing; Signal transduction
Pathway map
riu02020  Two-component system
riu02020

Other DBs
GO: 0000160
Organism
Rahnella inusitata [GN:riu]
Gene
I2123_18895  phoR; phosphate regulon sensor histidine kinase PhoR [KO:K07636] [EC:2.7.13.3]
I2123_18900  phoB; phosphate response regulator transcription factor PhoB [KO:K07657]
I2123_11765  phoA; alkaline phosphatase [KO:K01077] [EC:3.1.3.1]
I2123_01960  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
I2123_09620  phoQ; two-component system sensor histidine kinase PhoQ [KO:K07637] [EC:2.7.13.3]
I2123_09625  phoP; two-component system response regulator PhoP [KO:K07660]
I2123_04790  phosphatase PAP2 family protein [KO:K09474] [EC:3.1.3.2]
I2123_07960  phosphatase PAP2 family protein [KO:K09474] [EC:3.1.3.2]
I2123_03120  envZ; two-component system sensor histidine kinase EnvZ [KO:K07638] [EC:2.7.13.3]
I2123_03115  ompR; two-component system response regulator OmpR [KO:K07659]
I2123_08870  ompC; porin OmpC [KO:K09475]
I2123_11130  ompC; porin OmpC [KO:K09475]
I2123_16385  ompC; porin OmpC [KO:K09476]
I2123_01255  cpxA; envelope stress sensor histidine kinase CpxA [KO:K07640] [EC:2.7.13.3]
I2123_01250  cpxR; envelope stress response regulator transcription factor CpxR [KO:K07662]
I2123_21225  mzrA; EnvZ/OmpR regulon moderator MzrA [KO:K25864]
I2123_12505  rstB; two-component system sensor histidine kinase RstB [KO:K07639] [EC:2.7.13.3]
I2123_12510  rstA; two-component system response regulator RstA [KO:K07661]
I2123_19850  degP; serine endoprotease DegP [KO:K04771] [EC:3.4.21.107]
I2123_07375  baeS; two-component system sensor histidine kinase BaeS [KO:K07642] [EC:2.7.13.3]
I2123_07370  baeR; two-component system response regulator BaeR [KO:K07664]
I2123_05980  MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit [KO:K07799]
I2123_05985  efflux RND transporter permease subunit [KO:K07788]
I2123_05990  efflux RND transporter permease subunit [KO:K07789]
I2123_07380  mdtD; multidrug transporter subunit MdtD [KO:K18326]
I2123_18220  acrD; multidrug efflux RND transporter permease AcrD [KO:K18324]
I2123_04435  pmrB; two-component system sensor histidine kinase PmrB [KO:K07643] [EC:2.7.13.3]
I2123_04440  pmrA; two-component system response regulator PmrA [KO:K07771]
I2123_10275  arnB; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [KO:K07806] [EC:2.6.1.87]
I2123_03940  heavy metal sensor histidine kinase [KO:K07644] [EC:2.7.13.3]
I2123_04025  Cu(+)/Ag(+) sensor histidine kinase [KO:K07644] [EC:2.7.13.3]
I2123_16985  heavy metal sensor histidine kinase [KO:K07644] [EC:2.7.13.3]
I2123_03945  heavy metal response regulator transcription factor [KO:K07665]
I2123_04020  response regulator transcription factor CusR [KO:K07665]
I2123_16990  heavy metal response regulator transcription factor [KO:K07665]
I2123_04015  efflux transporter outer membrane subunit [KO:K07796]
I2123_04010  cusF; cation efflux system protein CusF [KO:K07810]
I2123_13980  copper-binding protein [KO:K07810]
I2123_04005  efflux RND transporter periplasmic adaptor subunit [KO:K07798]
I2123_13990  efflux RND transporter periplasmic adaptor subunit [KO:K07798]
I2123_04000  CusA/CzcA family heavy metal efflux RND transporter [KO:K07787]
I2123_13995  efflux RND transporter permease subunit [KO:K07787]
I2123_19950  qseC; two-component system sensor histidine kinase QseC [KO:K07645] [EC:2.7.13.3]
I2123_19955  response regulator [KO:K07666]
I2123_14920  flhD; flagellar transcriptional regulator FlhD [KO:K02403]
I2123_14915  flhC; flagellar transcriptional regulator FlhC [KO:K02402]
I2123_11340  FliC/FljB family flagellin [KO:K02406]
I2123_11345  RNA polymerase sigma factor FliA [KO:K02405]
I2123_14910  motA; flagellar motor stator protein MotA [KO:K02556]
I2123_17520  kdpD; two-component system sensor histidine kinase KdpD [KO:K07646] [EC:2.7.13.3]
I2123_17525  kdpE; two-component system response regulator KdpE [KO:K07667]
I2123_17505  kdpA; potassium-transporting ATPase subunit KdpA [KO:K01546]
I2123_17510  kdpB; potassium-transporting ATPase subunit KdpB [KO:K01547] [EC:7.2.2.6]
I2123_17515  kdpC; potassium-transporting ATPase subunit KdpC [KO:K01548]
I2123_17500  K(+)-transporting ATPase subunit F [KO:K01545]
I2123_21305  arcB; aerobic respiration two-component sensor histidine kinase ArcB [KO:K07648] [EC:2.7.13.3]
I2123_20560  arcA; two-component system response regulator ArcA [KO:K07773]
I2123_07885  glycoside hydrolase family 68 protein [KO:K00692] [EC:2.4.1.10]
I2123_02040  dnaA; chromosomal replication initiator protein DnaA [KO:K02313]
I2123_10865  ddpX; D-alanyl-D-alanine dipeptidase [KO:K08641] [EC:3.4.13.22]
I2123_05970  M15 family metallopeptidase [KO:K07260] [EC:3.4.17.14]
I2123_23605  TonB-dependent siderophore receptor [KO:K19611]
I2123_05805  sensor histidine kinase [KO:K07700] [EC:2.7.13.3]
I2123_05800  response regulator [KO:K07702]
I2123_06940  dcuS; two-component system sensor histidine kinase DcuS [KO:K07701] [EC:2.7.13.3]
I2123_06935  dcuR; two-component system response regulator DcuR [KO:K07703]
I2123_16720  NAD-dependent malic enzyme [KO:K00027] [EC:1.1.1.38]
I2123_13620  narX; nitrate/nitrite two-component system sensor histidine kinase NarX [KO:K07673] [EC:2.7.13.3]
I2123_13625  narL; two-component system response regulator NarL [KO:K07684]
I2123_11630  nitrate reductase subunit alpha [KO:K00370] [EC:1.7.5.1 1.7.99.-]
I2123_11635  narH; nitrate reductase subunit beta [KO:K00371] [EC:1.7.5.1 1.7.99.-]
I2123_11645  narI; respiratory nitrate reductase subunit gamma [KO:K00374] [EC:1.7.5.1 1.7.99.-]
I2123_11640  narJ; nitrate reductase molybdenum cofactor assembly chaperone [KO:K00373]
I2123_02245  fdnG; formate dehydrogenase-N subunit alpha [KO:K08348] [EC:1.17.5.3]
I2123_04130  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
I2123_04125  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
I2123_04120  frdC; fumarate reductase subunit FrdC [KO:K00246]
I2123_04115  frdD; fumarate reductase subunit FrdD [KO:K00247]
I2123_13170  uhpC; MFS transporter family glucose-6-phosphate receptor UhpC [KO:K07783]
I2123_13165  MASE1 domain-containing protein [KO:K20263] [EC:2.7.13.3]
I2123_13160  response regulator transcription factor [KO:K20264]
I2123_06435  rcsF; Rcs stress response system protein RcsF [KO:K06080]
I2123_08465  rcsC; two-component system sensor histidine kinase RcsC [KO:K07677] [EC:2.7.13.3]
I2123_08475  rcsD; phosphotransferase RcsD [KO:K07676] [EC:2.7.13.3]
I2123_14060  rcsA; transcriptional regulator RcsA [KO:K07781]
I2123_20600  rcsA; transcriptional regulator RcsA [KO:K07781]
I2123_08470  rcsB; transcriptional regulator RcsB [KO:K07687]
I2123_05265  barA; two-component sensor histidine kinase BarA [KO:K07678] [EC:2.7.13.3]
I2123_09205  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
I2123_11660  response regulator transcription factor [KO:K07689]
I2123_23025  LuxR family transcriptional regulator [KO:K07782]
I2123_05445  csrA; carbon storage regulator CsrA [KO:K03563]
I2123_24555  transporter substrate-binding domain-containing protein [KO:K07679] [EC:2.7.13.3]
I2123_24550  response regulator transcription factor [KO:K07690]
I2123_24565  response regulator transcription factor [KO:K07690]
I2123_19785  spore coat protein U domain-containing protein [KO:K27078]
I2123_19790  spore coat U domain-containing protein [KO:K27078]
I2123_19795  spore coat protein U domain-containing protein [KO:K27078]
I2123_19810  spore coat protein U domain-containing protein [KO:K27078]
I2123_19800  molecular chaperone [KO:K07346]
I2123_02810  fimbrial biogenesis outer membrane usher protein [KO:K07347]
I2123_03100  fimbrial biogenesis outer membrane usher protein [KO:K07347]
I2123_11685  fimbrial outer membrane usher protein [KO:K07347]
I2123_19805  fimbrial biogenesis outer membrane usher protein [KO:K07347]
I2123_22560  fimbrial biogenesis outer membrane usher protein [KO:K07347]
I2123_23445  fimbrial biogenesis outer membrane usher protein [KO:K07347]
I2123_06285  glnD; bifunctional uridylyltransferase/uridylyl-removing protein GlnD [KO:K00990] [EC:2.7.7.59]
I2123_07090  glnB; nitrogen regulatory protein P-II [KO:K04751]
I2123_01755  glnL; nitrogen regulation protein NR(II) [KO:K07708] [EC:2.7.13.3]
I2123_01760  glnG; nitrogen regulation protein NR(I) [KO:K07712]
I2123_01750  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
I2123_02500  dicarboxylate/amino acid:cation symporter [KO:K11103]
I2123_21445  rpoN; RNA polymerase factor sigma-54 [KO:K03092]
I2123_07075  HAMP domain-containing histidine kinase [KO:K07711] [EC:2.7.13.3]
I2123_07085  glrR; two-component system response regulator GlrR [KO:K07715]
I2123_14835  cheR; protein-glutamate O-methyltransferase CheR [KO:K00575] [EC:2.1.1.80]
I2123_04270  Cache 3/Cache 2 fusion domain-containing protein [KO:K03406]
I2123_06955  HAMP domain-containing protein [KO:K03406]
I2123_17125  PAS domain-containing methyl-accepting chemotaxis protein [KO:K03406]
I2123_17290  Tar ligand binding domain-containing protein [KO:K03406]
I2123_17555  Tar ligand binding domain-containing protein [KO:K03406]
I2123_21830  MCP four helix bundle domain-containing protein [KO:K03406]
I2123_24480  MCP four helix bundle domain-containing protein [KO:K03406]
I2123_02010  methyl-accepting chemotaxis protein [KO:K03406]
I2123_02325  methyl-accepting chemotaxis protein [KO:K03406]
I2123_04365  Tar ligand binding domain-containing protein [KO:K05874]
I2123_14845  Tar ligand binding domain-containing protein [KO:K05874]
I2123_05960  HAMP domain-containing protein [KO:K05875]
I2123_17190  HAMP domain-containing protein [KO:K05875]
I2123_02230  methyl-accepting chemotaxis protein [KO:K05875]
I2123_14065  Tar ligand binding domain-containing protein [KO:K05876]
I2123_22815  Tar ligand binding domain-containing protein [KO:K05876]
I2123_14840  Tar ligand binding domain-containing protein [KO:K05877]
I2123_22810  PAS domain-containing protein [KO:K03776]
I2123_14895  cheW; chemotaxis protein CheW [KO:K03408]
I2123_14900  cheA; chemotaxis protein CheA [KO:K03407] [EC:2.7.13.3]
I2123_14825  cheY; chemotaxis response regulator CheY [KO:K03413]
I2123_14830  chemotaxis response regulator protein-glutamate methylesterase [KO:K03412] [EC:3.1.1.61 3.5.1.44]
I2123_14350  chemotaxis protein CheV [KO:K03415]
I2123_24560  response regulator [KO:K02658]
I2123_25255  PhnD/SsuA/transferrin family substrate-binding protein [KO:K13040] [EC:2.7.13.3]
I2123_25260  ttrR; two-component system response regulator TtrR [KO:K13041]
I2123_25240  ttrA; tetrathionate reductase subunit TtrA [KO:K08357]
I2123_25250  ttrB; tetrathionate reductase subunit TtrB [KO:K08358]
I2123_25245  ttrC; tetrathionate reductase subunit TtrC [KO:K08359]
I2123_17690  amino acid ABC transporter ATP-binding protein [KO:K10004] [EC:7.4.2.1]
I2123_17685  gltK; glutamate/aspartate ABC transporter permease GltK [KO:K10002]
I2123_17680  amino acid ABC transporter permease [KO:K10003]
I2123_17675  amino acid ABC transporter substrate-binding protein [KO:K10001]
I2123_03295  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
I2123_04715  crotonase/enoyl-CoA hydratase family protein [KO:K13816]
I2123_19570  glsB; glutaminase B [KO:K01425] [EC:3.5.1.2]
I2123_13920  cytochrome ubiquinol oxidase subunit I [KO:K00425] [EC:7.1.1.7]
I2123_17390  cydA; cytochrome ubiquinol oxidase subunit I [KO:K00425] [EC:7.1.1.7]
I2123_22975  cytochrome ubiquinol oxidase subunit I [KO:K00425] [EC:7.1.1.7]
I2123_13925  cydB; cytochrome d ubiquinol oxidase subunit II [KO:K00426] [EC:7.1.1.7]
I2123_17385  cydB; cytochrome d ubiquinol oxidase subunit II [KO:K00426] [EC:7.1.1.7]
I2123_22980  cydB; cytochrome d ubiquinol oxidase subunit II [KO:K00426] [EC:7.1.1.7]
I2123_17380  cydX; cytochrome bd-I oxidase subunit CydX [KO:K00424] [EC:7.1.1.7]
I2123_05130  tolC; outer membrane channel protein TolC [KO:K12340]
I2123_19610  polysaccharide export protein [KO:K01991]
I2123_19690  polysaccharide export protein [KO:K01991]
I2123_19605  low molecular weight phosphotyrosine protein phosphatase [KO:K25307] [EC:3.1.3.48]
I2123_19685  low molecular weight phosphotyrosine protein phosphatase [KO:K25307] [EC:3.1.3.48]
I2123_19600  polysaccharide biosynthesis tyrosine autokinase [KO:K16692] [EC:2.7.10.3]
I2123_19680  polysaccharide biosynthesis tyrosine autokinase [KO:K16692] [EC:2.7.10.3]
I2123_00895  wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) [KO:K01791] [EC:5.1.3.14]
I2123_00890  wecC; UDP-N-acetyl-D-mannosamine dehydrogenase [KO:K02472] [EC:1.1.1.336]
I2123_17180  putative acyl-CoA thioester hydrolase [KO:K01051] [EC:3.1.1.11]
I2123_13380  FecR domain-containing protein [KO:K07165]
I2123_10955  flgM; anti-sigma-28 factor FlgM [KO:K02398]
Compound
C00007  Oxygen
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00034  Manganese
C00036  Oxaloacetate
C00038  Zinc cation
C00042  Succinate
C00049  L-Aspartate
C00064  L-Glutamine
C00070  Copper
C00088  Nitrite
C00092  D-Glucose 6-phosphate
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00164  Acetoacetate
C00237  CO
C00238  Potassium cation
C00244  Nitrate
C00282  Hydrogen
C00291  Nickel
C00305  Magnesium cation
C00399  Ubiquinone
C00533  Nitric oxide
C00547  L-Noradrenaline
C00697  Nitrogen
C00788  L-Adrenaline
C00828  Menaquinone
C01019  L-Fucose
C01104  Trimethylamine N-oxide
C01667  Bacitracin
C02084  Tetrathionate
C05757  (3R)-3-Hydroxydodecanoyl-[acyl-carrier protein]
C05818  2-Demethylmenaquinone
C06230  Fe-enterobactin
C06689  Vancomycin
C06696  Lead
C11612  Polymyxin B
C11842  N-(3-(S)-Hydroxybutyryl)homoserine lactone
C11849  3-Hydroxy-palmitic acid methyl ester
C12008  Ramoplanin A2
C13768  Colistin sulfate
C14819  Fe3+
C16421  AI-2
C16463  3',5'-Cyclic diGMP
C16640  CAI-1
C16665  12-Methyltetradecanoic acid
C18206  cis-11-Methyl-2-dodecenoic acid
C21220  AIP-1
C21221  CSP
C21241  AIP-2
C21242  AIP-3
C21243  AIP-4
C21245  AgrD1 peptide
D07746  Colistin (INN)
D08401  Polymyxin B (INN)
Reference
  Authors
Yamamoto K, Hirao K, Oshima T, Aiba H, Utsumi R, Ishihama A.
  Title
Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli.
  Journal
J Biol Chem 280:1448-56 (2005)
DOI:10.1074/jbc.M410104200
Reference
  Authors
Abdel-Fattah WR, Chen Y, Eldakak A, Hulett FM.
  Title
Bacillus subtilis phosphorylated PhoP: direct activation of the E(sigma)A- and repression of the E(sigma)E-responsive phoB-PS+V promoters during pho response.
  Journal
J Bacteriol 187:5166-78 (2005)
DOI:10.1128/JB.187.15.5166-5178.2005
Reference
  Authors
Navarre WW, Halsey TA, Walthers D, Frye J, McClelland M, Potter JL, Kenney LJ, Gunn JS, Fang FC, Libby SJ.
  Title
Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ.
  Journal
Mol Microbiol 56:492-508 (2005)
DOI:10.1111/j.1365-2958.2005.04553.x
Reference
  Authors
Cai SJ, Inouye M.
  Title
EnvZ-OmpR interaction and osmoregulation in Escherichia coli.
  Journal
J Biol Chem 277:24155-61 (2002)
DOI:10.1074/jbc.M110715200
Reference
  Authors
Batchelor E, Walthers D, Kenney LJ, Goulian M.
  Title
The Escherichia coli CpxA-CpxR envelope stress response system regulates expression of the porins ompF and ompC.
  Journal
J Bacteriol 187:5723-31 (2005)
DOI:10.1128/JB.187.16.5723-5731.2005
Reference
  Authors
Nagakubo S, Nishino K, Hirata T, Yamaguchi A.
  Title
The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC.
  Journal
J Bacteriol 184:4161-7 (2002)
DOI:10.1128/JB.184.15.4161-4167.2002
Reference
  Authors
Hagiwara D, Yamashino T, Mizuno T.
  Title
A Genome-wide view of the Escherichia coli BasS-BasR two-component system implicated in iron-responses.
  Journal
Biosci Biotechnol Biochem 68:1758-67 (2004)
DOI:10.1271/bbb.68.1758
Reference
  Authors
Munson GP, Lam DL, Outten FW, O'Halloran TV.
  Title
Identification of a copper-responsive two-component system on the chromosome of Escherichia coli K-12.
  Journal
J Bacteriol 182:5864-71 (2000)
DOI:10.1128/JB.182.20.5864-5871.2000
Reference
  Authors
Sperandio V, Torres AG, Kaper JB.
  Title
Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli.
  Journal
Mol Microbiol 43:809-21 (2002)
DOI:10.1046/j.1365-2958.2002.02803.x
Reference
  Authors
Epstein W.
  Title
The roles and regulation of potassium in bacteria.
  Journal
Prog Nucleic Acid Res Mol Biol 75:293-320 (2003)
DOI:10.1016/S0079-6603(03)75008-9
Reference
  Authors
Ansaldi M, Simon G, Lepelletier M, Mejean V.
  Title
The TorR high-affinity binding site plays a key role in both torR autoregulation and torCAD operon expression in Escherichia coli.
  Journal
J Bacteriol 182:961-6 (2000)
DOI:10.1128/JB.182.4.961-966.2000
Reference
  Authors
Malpica R, Franco B, Rodriguez C, Kwon O, Georgellis D.
  Title
Identification of a quinone-sensitive redox switch in the ArcB sensor kinase.
  Journal
Proc Natl Acad Sci U S A 101:13318-23 (2004)
DOI:10.1073/pnas.0403064101
Reference
PMID:2666399
  Authors
Widenhorn KA, Somers JM, Kay WW.
  Title
Genetic regulation of the tricarboxylate transport operon (tctI) of Salmonella typhimurium.
  Journal
J Bacteriol 171:4436-41 (1989)
DOI:10.1128/JB.171.8.4436-4441.1989
Reference
  Authors
Hyyrylainen HL, Bolhuis A, Darmon E, Muukkonen L, Koski P, Vitikainen M, Sarvas M, Pragai Z, Bron S, van Dijl JM, Kontinen VP.
  Title
A novel two-component regulatory system in Bacillus subtilis for the survival of severe secretion stress.
  Journal
Mol Microbiol 41:1159-72 (2001)
DOI:10.1046/j.1365-2958.2001.02576.x
Reference
  Authors
Zhang X, Hulett FM.
  Title
ResD signal transduction regulator of aerobic respiration in Bacillus subtilis: ctaA promoter regulation.
  Journal
Mol Microbiol 37:1208-19 (2000)
DOI:10.1046/j.1365-2958.2000.02076.x
Reference
  Authors
Senadheera MD, Guggenheim B, Spatafora GA, Huang YC, Choi J, Hung DC, Treglown JS, Goodman SD, Ellen RP, Cvitkovitch DG.
  Title
A VicRK signal transduction system in Streptococcus mutans affects gtfBCD, gbpB, and ftf expression, biofilm formation, and genetic competence development.
  Journal
J Bacteriol 187:4064-76 (2005)
DOI:10.1128/JB.187.12.4064-4076.2005
Reference
  Authors
He H, Zahrt TC.
  Title
Identification and characterization of a regulatory sequence recognized by Mycobacterium tuberculosis persistence regulator MprA.
  Journal
J Bacteriol 187:202-12 (2005)
DOI:10.1128/JB.187.1.202-212.2005
Reference
  Authors
Hutchings MI
  Title
Unusual two-component signal transduction pathways in the actinobacteria.
  Journal
Adv Appl Microbiol 61:1-26 (2007)
DOI:10.1016/S0065-2164(06)61001-0
Reference
  Authors
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  Title
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Related
pathway
riu00190  Oxidative phosphorylation
riu00550  Peptidoglycan biosynthesis
riu00910  Nitrogen metabolism
riu02030  Bacterial chemotaxis
riu02040  Flagellar assembly
riu03070  Bacterial secretion system
KO pathway
ko02020   
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