KEGG   PATHWAY: rsin00020
Entry
rsin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Richelia sinica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsin00020  Citrate cycle (TCA cycle)
rsin00020

Module
rsin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rsin00020]
rsin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rsin00020]
Other DBs
GO: 0006099
Organism
Richelia sinica [GN:rsin]
Gene
B6N60_01325  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
B6N60_04242  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B6N60_02779  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B6N60_02512  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B6N60_00326  CoA-binding domain protein [KO:K01902] [EC:6.2.1.5]
B6N60_00325  ATP-grasp domain protein [KO:K01903] [EC:6.2.1.5]
B6N60_02496  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
B6N60_02793  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
B6N60_01390  CoB--CoM heterodisulfide reductase [KO:K00241]
B6N60_02581  pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
B6N60_00771  transketolase central region [KO:K00162] [EC:1.2.4.1]
B6N60_04683  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
B6N60_04371  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
B6N60_01083  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rsin00010  Glycolysis / Gluconeogenesis
rsin00053  Ascorbate and aldarate metabolism
rsin00061  Fatty acid biosynthesis
rsin00071  Fatty acid degradation
rsin00190  Oxidative phosphorylation
rsin00220  Arginine biosynthesis
rsin00250  Alanine, aspartate and glutamate metabolism
rsin00280  Valine, leucine and isoleucine degradation
rsin00350  Tyrosine metabolism
rsin00470  D-Amino acid metabolism
rsin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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