KEGG   PATHWAY: rtx03410
Entry
rtx03410                    Pathway                                
Name
Base excision repair - Rathayibacter toxicus 70137
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
rtx03410  Base excision repair
rtx03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Rathayibacter toxicus 70137 [GN:rtx]
Gene
TI83_08390  uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
TI83_07785  adenine glycosylase [KO:K03575] [EC:3.2.2.31]
TI83_04630  hypothetical protein [KO:K03652] [EC:3.2.2.21]
TI83_07295  DNA lyase [KO:K10563] [EC:3.2.2.23 4.2.99.18]
TI83_05480  formamidopyrimidine-DNA glycosylase [KO:K10563] [EC:3.2.2.23 4.2.99.18]
TI83_06005  DNA glycosylase [KO:K05522] [EC:3.2.2.- 4.2.99.18]
TI83_02530  DNA glycosylase [KO:K05522] [EC:3.2.2.- 4.2.99.18]
TI83_07875  3-methyladenine DNA glycosylase [KO:K01246] [EC:3.2.2.20]
TI83_04850  DNA glycosylase [KO:K03649] [EC:3.2.2.28]
TI83_00445  exonuclease [KO:K01142] [EC:3.1.11.2]
TI83_09060  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
TI83_06835  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
TI83_05770  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
LinkDB

DBGET integrated database retrieval system