KEGG   PATHWAY: senr00920
Entry
senr00920                   Pathway                                
Name
Sulfur metabolism - Salmonella enterica subsp. enterica serovar Typhimurium DT2
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
senr00920  Sulfur metabolism
senr00920

Module
senr_M00021  Cysteine biosynthesis, serine => cysteine [PATH:senr00920]
senr_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:senr00920]
Other DBs
GO: 0006790
Organism
Salmonella enterica subsp. enterica serovar Typhimurium DT2 [GN:senr]
Gene
STMDT2_24071  cysP; thiosulphate-binding protein precursor [KO:K02048]
STMDT2_39261  sbp; periplasmic sulphate binding protein [KO:K23163]
STMDT2_24061  cysU; sulphate transport system permease protein CysT [KO:K02046]
STMDT2_24051  cysW; sulphate transport system permease protein CysW [KO:K02047]
STMDT2_24041  cysA; sulphate transport ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
STMDT2_28341  cysN; Sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
STMDT2_28351  cysD; ATP sulfurylase (ATP:sulfate adenyltransferase) [KO:K00957] [EC:2.7.7.4]
STMDT2_28331  cysC; Adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
STMDT2_42521  cysQ; cysQ protein [KO:K01082] [EC:3.1.3.7]
STMDT2_28461  cysH; Phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
STMDT2_28481  cysJ; sulfite reductase (NADPH) flavoprotein beta subunit [KO:K00380] [EC:1.8.1.2]
STMDT2_28471  cysI; sulfite reductase (NADPH) hemoprotein alpha subunit [KO:K00381] [EC:1.8.1.2]
STMDT2_25091  asrA; anaerobic sulfite reductase subunit A [KO:K16950]
STMDT2_25101  asrB; anaerobic sulfite reductase subunit B [KO:K16951]
STMDT2_25111  asrC; anaerobic sulfite reductase subunit C [KO:K00385]
STMDT2_13151  ttrA; tetrathionate reductase subunit A [KO:K08357]
STMDT2_13171  ttrB; tetrathionate reductase subunit B [KO:K08358]
STMDT2_13161  ttrC; tetrathionate reductase subunit C (membrane protein) [KO:K08359]
STMDT2_20381  phsA; thiosulfate reductase precursor [KO:K08352] [EC:1.8.5.5]
STMDT2_20371  phsB; thiosulfate reductase electron transport protein PhsB [KO:K08353]
STMDT2_20361  phsC; thiosulfate reductase cytochrome b subunit [KO:K08354]
STMDT2_24941  sseA; putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
STMDT2_34121  glpE; conserved hypothetical protein [KO:K02439] [EC:2.8.1.1]
STMDT2_35841  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
STMDT2_23931  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
STMDT2_40311  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
STMDT2_39631  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
STMDT2_41561  anaerobic dimethyl sulfoxide reductase chain [KO:K07306] [EC:1.8.5.3]
STMDT2_09011  dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor [KO:K07306] [EC:1.8.5.3]
STMDT2_41571  dmsB; anaerobic dimethyl sulfoxide reductase chain A [KO:K07307]
STMDT2_09021  dmsB; anaerobic dimethyl sulfoxide reductase chain B [KO:K07307]
STMDT2_14241  putative anaerobic dimethyl sulfoxide reductase [KO:K07307]
STMDT2_41581  dmsC; putative dimethyl sulfoxide reductase subunit C [KO:K07308]
STMDT2_09031  dmsC; anaerobic dimethyl sulfoxide reductase chain C [KO:K07308]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
senr00260  Glycine, serine and threonine metabolism
senr00270  Cysteine and methionine metabolism
senr00680  Methane metabolism
senr00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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