KEGG   PATHWAY: shr04136
Entry
shr04136                    Pathway                                
Name
Autophagy - other - Sarcophilus harrisii (Tasmanian devil)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
shr04136  Autophagy - other
shr04136

Other DBs
GO: 0006914
Organism
Sarcophilus harrisii (Tasmanian devil) [GN:shr]
Gene
100930970  RPTOR; regulatory-associated protein of mTOR isoform X1 [KO:K07204]
100931480  MTOR; serine/threonine-protein kinase mTOR isoform X1 [KO:K07203] [EC:2.7.11.1]
100919659  MLST8; target of rapamycin complex subunit LST8 [KO:K08266]
100934448  ULK2; serine/threonine-protein kinase ULK2 [KO:K08269] [EC:2.7.11.1]
100930382  ATG13; autophagy-related protein 13 isoform X1 [KO:K08331]
100931777  ATG101; autophagy-related protein 101 [KO:K19730]
100931357  IGBP1; immunoglobulin-binding protein 1 [KO:K17606]
100921980  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
100927043  PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
100932648  serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like [KO:K04382] [EC:3.1.3.16]
100915884  ATG9B; autophagy-related protein 9B isoform X1 [KO:K17907]
100933049  ATG9A; autophagy-related protein 9A [KO:K17907]
100914858  ATG2A; autophagy-related protein 2 homolog A [KO:K17906]
100917633  ATG2B; autophagy-related protein 2 homolog B isoform X1 [KO:K17906]
100920269  WIPI2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
100931931  WIPI1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908]
100931761  BECN1; beclin-1 isoform X1 [KO:K08334]
100924620  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
100919089  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 isoform X1 [KO:K08333] [EC:2.7.11.1]
100923575  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
100934445  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
100915878  ATG16L1; autophagy-related protein 16-1 isoform X1 [KO:K17890]
100933380  ATG7; ubiquitin-like modifier-activating enzyme ATG7 [KO:K08337]
100918781  ATG10; ubiquitin-like-conjugating enzyme ATG10 isoform X1 [KO:K17888]
100932255  ATG3; ubiquitin-like-conjugating enzyme ATG3 isoform X4 [KO:K08343]
100930358  GABARAP; gamma-aminobutyric acid receptor-associated protein isoform X1 [KO:K08341]
100931419  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
100931278  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
100931463  ATG4D; cysteine protease ATG4D isoform X1 [KO:K08342] [EC:3.4.22.-]
100931882  ATG4A; cysteine protease ATG4A isoform X1 [KO:K08342] [EC:3.4.22.-]
100930091  ATG4B; cysteine protease ATG4B isoform X1 [KO:K08342] [EC:3.4.22.-]
100914909  ATG4C; cysteine protease ATG4C isoform X1 [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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