KEGG   PATHWAY: srx00534
Entry
srx00534                    Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Sinocyclocheilus rhinocerous
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
srx00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
srx00534

Module
srx_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:srx00534]
srx_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:srx00534]
Other DBs
GO: 0030210
Organism
Sinocyclocheilus rhinocerous [GN:srx]
Gene
107729195  xylosyltransferase 1-like [KO:K00771] [EC:2.4.2.26]
107743013  xylosyltransferase 2-like [KO:K00771] [EC:2.4.2.26]
107733871  xylosyltransferase 1-like [KO:K00771] [EC:2.4.2.26]
107748866  xylosyltransferase 2-like isoform X1 [KO:K00771] [EC:2.4.2.26]
107717396  beta-1,4-galactosyltransferase 7-like [KO:K00733] [EC:2.4.1.133]
107741053  beta-1,4-galactosyltransferase 7-like [KO:K00733] [EC:2.4.1.133]
107751019  beta-1,3-galactosyltransferase 6-like [KO:K00734] [EC:2.4.1.134]
107714504  beta-1,3-galactosyltransferase 6-like [KO:K00734] [EC:2.4.1.134]
107749807  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3-like [KO:K10158] [EC:2.4.1.135]
107750592  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3-like [KO:K10158] [EC:2.4.1.135]
107722455  LOW QUALITY PROTEIN: exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
107715497  exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
107719384  exostosin-like 3 isoform X1 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
107745900  exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
107706235  extl1; exostosin-like 1 isoform X1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107706241  exostosin-1c [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107711539  exostosin-1a [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107727350  exostosin-1-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107715577  LOW QUALITY PROTEIN: exostosin-1a-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107754264  exostosin-1c-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107754269  exostosin-1b isoform X1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107733302  exostosin-1-like [KO:K02366] [EC:2.4.1.224 2.4.1.225]
107750554  exostosin-2 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
107754691  exostosin-2-like [KO:K02367] [EC:2.4.1.224 2.4.1.225]
107721405  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [KO:K02576] [EC:3.5.1.- 2.8.2.8]
107748107  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [KO:K02576] [EC:3.5.1.- 2.8.2.8]
107754481  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [KO:K02576] [EC:3.5.1.- 2.8.2.8]
107755463  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like isoform X1 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
107743572  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [KO:K02577] [EC:3.5.1.- 2.8.2.8]
107749844  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [KO:K02577] [EC:3.5.1.- 2.8.2.8]
107726987  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [KO:K02577] [EC:3.5.1.- 2.8.2.8]
107745068  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like [KO:K02579] [EC:3.5.1.- 2.8.2.8]
107754165  LOW QUALITY PROTEIN: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like [KO:K02579] [EC:3.5.1.- 2.8.2.8]
107750457  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like [KO:K02579] [EC:3.5.1.- 2.8.2.8]
107755093  D-glucuronyl C5-epimerase-like [KO:K01793] [EC:5.1.3.17]
107720792  D-glucuronyl C5-epimerase-like [KO:K01793] [EC:5.1.3.17]
107740438  D-glucuronyl C5-epimerase-like [KO:K01793] [EC:5.1.3.17]
107740877  D-glucuronyl C5-epimerase-like [KO:K01793] [EC:5.1.3.17]
107718112  heparan sulfate 2-O-sulfotransferase 1-like [KO:K02513] [EC:2.8.2.-]
107722647  heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
107740348  heparan sulfate 2-O-sulfotransferase 1-like [KO:K02513] [EC:2.8.2.-]
107751310  heparan sulfate 2-O-sulfotransferase 1-like [KO:K02513] [EC:2.8.2.-]
107727332  heparan-sulfate 6-O-sulfotransferase 1-A [KO:K02514] [EC:2.8.2.-]
107757697  heparan-sulfate 6-O-sulfotransferase 1-B-like [KO:K02514] [EC:2.8.2.-]
107748934  heparan-sulfate 6-O-sulfotransferase 1-A-like [KO:K02514] [EC:2.8.2.-]
107729660  heparan-sulfate 6-O-sulfotransferase 1-B [KO:K02514] [EC:2.8.2.-]
107707251  heparan-sulfate 6-O-sulfotransferase 2 [KO:K08102] [EC:2.8.2.-]
107751962  heparan-sulfate 6-O-sulfotransferase 2-like [KO:K08102] [EC:2.8.2.-]
107733651  heparan-sulfate 6-O-sulfotransferase 3-like [KO:K08103] [EC:2.8.2.-]
107713090  heparan-sulfate 6-O-sulfotransferase 3-like [KO:K08103] [EC:2.8.2.-]
107720131  heparan-sulfate 6-O-sulfotransferase 3 [KO:K08103] [EC:2.8.2.-]
107717313  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107743333  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107743334  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107720583  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107735826  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107722717  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107741295  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107750130  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
107741797  heparan sulfate glucosamine 3-O-sulfotransferase 2-like [KO:K07808] [EC:2.8.2.29]
107719184  heparan sulfate glucosamine 3-O-sulfotransferase 2-like [KO:K07808] [EC:2.8.2.29]
107755450  heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like [KO:K07809] [EC:2.8.2.30]
107720425  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
107742598  heparan sulfate glucosamine 3-O-sulfotransferase 6-like [KO:K07809] [EC:2.8.2.30]
107711227  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
107753250  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
107753271  heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like [KO:K07809] [EC:2.8.2.30]
107744967  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
107724231  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [KO:K07809] [EC:2.8.2.30]
107750407  hs3st5; heparan sulfate glucosamine 3-O-sulfotransferase 5 isoform X1 [KO:K08104] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154   
G00155   
G00156   
G00157   
G00162   
G00163   
G00164   
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
srx00531  Glycosaminoglycan degradation
KO pathway
ko00534   
LinkDB

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