KEGG   PATHWAY: tcr03008
Entry
tcr03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Trypanosoma cruzi
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tcr03008  Ribosome biogenesis in eukaryotes
tcr03008

Organism
Trypanosoma cruzi [GN:tcr]
Gene
503757.40  protein kinase ck2 regulatory subunit [KO:K03115]
503513.10  casein kinase II, alpha chain [KO:K03097] [EC:2.7.11.1]
510761.60  casein kinase II [KO:K03097] [EC:2.7.11.1]
508741.320  casein kinase II, alpha chain [KO:K03097] [EC:2.7.11.1]
508649.10  beta propeller protein [KO:K14549]
509499.20  beta propeller protein [KO:K14549]
508817.140  hypothetical protein [KO:K14552]
509597.10  hypothetical protein [KO:K14552]
504103.80  hypothetical protein [KO:K14553]
503823.130  hypothetical protein [KO:K14554]
510285.20  hypothetical protein [KO:K14554]
507093.170  hypothetical protein [KO:K14555]
511245.50  hypothetical protein [KO:K14556]
506661.110  hypothetical protein [KO:K14556]
506241.200  hypothetical protein [KO:K14557]
506357.140  periodic tryptophan protein 2 [KO:K14558]
503811.20  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
506989.180  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
509161.20  hypothetical protein [KO:K14560]
504643.20  hypothetical protein [KO:K14560]
511753.130  U3 small nuclear ribonucloprotein (snRNP) [KO:K14561]
507923.20  U3 small nuclear ribonucloprotein (snRNP) [KO:K14561]
509715.40  fibrillarin [KO:K14563] [EC:2.1.1.-]
506211.250  fibrillarin [KO:K14563] [EC:2.1.1.-]
511287.150  fibrillarin [KO:K14563] [EC:2.1.1.-]
510105.50  fibrillarin [KO:K14563] [EC:2.1.1.-]
511573.58  nucleolar protein [KO:K14564]
508277.230  nucleolar RNA binding protein [KO:K14565]
508277.120  ribosomal protein S6 [KO:K12845]
509943.30  ribosomal protein S6 [KO:K12845]
504069.90  centromere/microtubule binding protein cbf5 [KO:K11131] [EC:5.4.99.-]
511145.70  centromere/microtubule binding protein cbf5 [KO:K11131] [EC:5.4.99.-]
507053.10  50S ribosomal protein L7Ae [KO:K11129]
510687.120  snoRNP protein gar1 [KO:K11128]
503891.54  nucleolar RNA-binding protein [KO:K11130]
510289.6  nucleolar RNA-binding protein [KO:K11130]
508899.120  hypothetical protein [KO:K14566]
511361.30  hypothetical protein [KO:K14566]
511283.170  hypothetical protein [KO:K14567]
508839.40  hypothetical protein [KO:K14568] [EC:2.1.1.260]
504741.110  hypothetical protein [KO:K14568] [EC:2.1.1.260]
510899.59  hypothetical protein [KO:K14569]
511303.90  hypothetical protein [KO:K14521] [EC:2.3.1.-]
509177.30  hypothetical protein [KO:K14521] [EC:2.3.1.-]
510761.30  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
506351.9  5'-3' exonuclease XRNA [KO:K12618] [EC:3.1.13.-]
505939.89  5'-3' exonuclease XRNA [KO:K12618] [EC:3.1.13.-]
507817.80  5'-3' exonuclease XNRA [KO:K12618] [EC:3.1.13.-]
507641.80  5'-3' exonuclease XRND [KO:K12619] [EC:3.1.13.-]
509331.9  5'-3' exonuclease XRNC [KO:K12619] [EC:3.1.13.-]
511305.10  5'-3' exonuclease XRNB [KO:K12619] [EC:3.1.13.-]
510431.160  nucleolar GTP-binding protein 1 [KO:K06943]
510395.30  GTPase [KO:K14537]
510397.5  GTP-binding protein [KO:K14537]
510609.30  GTPase [KO:K14537]
506629.80  vesicular transport protein (CDC48 homologue) [KO:K14571]
506367.180  vesicular transport protein (CDC48 homologue) [KO:K14571]
508707.80  RNA-binding protein [KO:K14573]
510423.40  hypothetical protein [KO:K11883]
503539.30  GTP-binding nuclear protein rtb2 [KO:K07936]
509455.80  GTP-binding nuclear protein rtb2 [KO:K07936]
511725.150  exportin 1 [KO:K14290]
503843.10  hypothetical protein [KO:K07562]
506729.90  hypothetical protein [KO:K07562]
506127.20  hypothetical protein [KO:K14284]
508173.180  nuclear transport factor 2 protein(NFT2) [KO:K14285]
506679.70  eukaryotic translation initiation factor 6 (eIF-6) [KO:K03264]
506265.209  hypothetical protein [KO:K14574]
504055.10  hypothetical protein [KO:K14574]
510351.70  hypothetical protein [KO:K14539] [EC:3.6.1.-]
507601.90  hypothetical protein [KO:K14539] [EC:3.6.1.-]
507023.280  hypothetical protein [KO:K18532] [EC:2.7.4.3]
509171.47  hypothetical protein [KO:K18532] [EC:2.7.4.3]
508409.150  hypothetical protein [KO:K07178] [EC:2.7.11.1]
510141.4  hypothetical protein [KO:K07178] [EC:2.7.11.1]
511753.70  hypothetical protein [KO:K07179] [EC:2.7.11.1]
507021.10  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tcr03010  Ribosome
KO pathway
ko03008   
LinkDB

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