KEGG   PATHWAY: tep00020
Entry
tep00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tepidanaerobacter acetatoxydans Re1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tep00020  Citrate cycle (TCA cycle)
tep00020

Module
tep_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tep00020]
tep_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tep00020]
Other DBs
GO: 0006099
Organism
Tepidanaerobacter acetatoxydans Re1 [GN:tep]
Gene
TepRe1_0155  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TepRe1_2276  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TepRe1_2277  3-isopropylmalate dehydratase [KO:K01681] [EC:4.2.1.3]
TepRe1_0156  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
TepRe1_2278  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
TepRe1_0556  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TepRe1_0308  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TepRe1_0645  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TepRe1_1301  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TepRe1_1302  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TepRe1_1303  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
TepRe1_1300  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
TepRe1_0496  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
TepRe1_0517  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
TepRe1_0497  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
TepRe1_0518  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
TepRe1_0170  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
TepRe1_0644  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
TepRe1_2201  Pyruvate synthase [KO:K00169] [EC:1.2.7.1]
TepRe1_2200  Pyruvate synthase [KO:K00170] [EC:1.2.7.1]
TepRe1_2203  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
TepRe1_2202  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
TepRe1_1988  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tep00010  Glycolysis / Gluconeogenesis
tep00053  Ascorbate and aldarate metabolism
tep00061  Fatty acid biosynthesis
tep00190  Oxidative phosphorylation
tep00220  Arginine biosynthesis
tep00250  Alanine, aspartate and glutamate metabolism
tep00280  Valine, leucine and isoleucine degradation
tep00350  Tyrosine metabolism
tep00470  D-Amino acid metabolism
tep00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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