KEGG   PATHWAY: tey00020
Entry
tey00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tetragenococcus halophilus YJ1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tey00020  Citrate cycle (TCA cycle)
tey00020

Module
tey_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tey00020]
tey_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tey00020]
Other DBs
GO: 0006099
Organism
Tetragenococcus halophilus YJ1 [GN:tey]
Gene
GLW17_07785  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GLW17_01550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GLW17_09125  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GLW17_01520  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GLW17_08735  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GLW17_01565  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GLW17_01560  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GLW17_01555  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
GLW17_09440  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tey00010  Glycolysis / Gluconeogenesis
tey00053  Ascorbate and aldarate metabolism
tey00061  Fatty acid biosynthesis
tey00071  Fatty acid degradation
tey00190  Oxidative phosphorylation
tey00220  Arginine biosynthesis
tey00250  Alanine, aspartate and glutamate metabolism
tey00280  Valine, leucine and isoleucine degradation
tey00350  Tyrosine metabolism
tey00470  D-Amino acid metabolism
tey00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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