KEGG   PATHWAY: tgt03030
Entry
tgt03030                    Pathway                                
Name
DNA replication - Tinamus guttatus (white-throated tinamou)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tgt03030  DNA replication
tgt03030

Organism
Tinamus guttatus (white-throated tinamou) [GN:tgt]
Gene
104573313  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
104580933  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
104577841  PCNA; proliferating cell nuclear antigen [KO:K04802]
104580160  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
104578815  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104568919  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
104573982  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
104572043  DNA primase large subunit-like [KO:K02685]
104574184  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
104574046  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
104568207  POLE; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
104568140  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
104571848  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
104565118  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
104576090  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
104566322  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
104571087  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
104569168  DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
104575746  RPA2; replication protein A 32 kDa subunit [KO:K10739]
104580849  RPA3; replication protein A 14 kDa subunit [KO:K10740]
104572054  RFC1; replication factor C subunit 1 [KO:K10754]
104572660  RFC2; replication factor C subunit 2 [KO:K10755]
104578047  RFC4; replication factor C subunit 4 [KO:K10755]
104566766  RFC5; replication factor C subunit 5 [KO:K10756]
104567562  RFC3; replication factor C subunit 3 [KO:K10756]
104572129  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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