KEGG   PATHWAY: thf00020
Entry
thf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Infirmifilum uzonense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thf00020  Citrate cycle (TCA cycle)
thf00020

Module
thf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:thf00020]
thf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thf00020]
Other DBs
GO: 0006099
Organism
Infirmifilum uzonense [GN:thf]
Gene
MA03_04020  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MA03_04840  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MA03_04015  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MA03_04845  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MA03_07015  hypothetical protein [KO:K01902] [EC:6.2.1.5]
MA03_07020  hypothetical protein [KO:K01903] [EC:6.2.1.5]
MA03_04130  hypothetical protein [KO:K00240] [EC:1.3.5.1]
MA03_04135  hypothetical protein [KO:K00241]
MA03_04140  hypothetical protein [KO:K00242]
MA03_00880  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
MA03_01785  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MA03_06860  hypothetical protein [KO:K00169] [EC:1.2.7.1]
MA03_07670  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
MA03_06855  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
MA03_07675  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
MA03_07660  hypothetical protein [KO:K00172] [EC:1.2.7.1]
MA03_06870  hypothetical protein [KO:K00172] [EC:1.2.7.1]
MA03_07665  ferredoxin [KO:K00171] [EC:1.2.7.1]
MA03_06865  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thf00010  Glycolysis / Gluconeogenesis
thf00061  Fatty acid biosynthesis
thf00071  Fatty acid degradation
thf00190  Oxidative phosphorylation
thf00220  Arginine biosynthesis
thf00250  Alanine, aspartate and glutamate metabolism
thf00280  Valine, leucine and isoleucine degradation
thf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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