KEGG   PATHWAY: thq00020
Entry
thq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermotoga sp. 2812B
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thq00020  Citrate cycle (TCA cycle)
thq00020

Module
thq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thq00020]
Other DBs
GO: 0006099
Organism
Thermotoga sp. 2812B [GN:thq]
Gene
T2812B_03310  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
T2812B_08260  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
T2812B_02795  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
T2812B_05380  2-ketoisovalerate ferredoxin reductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
T2812B_08175  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
T2812B_00250  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
T2812B_02710  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
T2812B_08170  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
T2812B_05375  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
T2812B_02705  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
T2812B_05370  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
T2812B_05385  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
T2812B_00245  ferredoxin [KO:K00176] [EC:1.2.7.3]
T2812B_01980  fumarate hydratase, N-terminal subunit [KO:K01677] [EC:4.2.1.2]
T2812B_01975  tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta [KO:K01678] [EC:4.2.1.2]
T2812B_04695  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
T2812B_04690  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
T2812B_04705  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
T2812B_04700  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thq00010  Glycolysis / Gluconeogenesis
thq00053  Ascorbate and aldarate metabolism
thq00061  Fatty acid biosynthesis
thq00071  Fatty acid degradation
thq00190  Oxidative phosphorylation
thq00220  Arginine biosynthesis
thq00250  Alanine, aspartate and glutamate metabolism
thq00280  Valine, leucine and isoleucine degradation
thq00350  Tyrosine metabolism
thq00470  D-Amino acid metabolism
thq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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