KEGG   PATHWAY: tli00020
Entry
tli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermovirga lienii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tli00020  Citrate cycle (TCA cycle)
tli00020

Module
tli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tli00020]
tli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tli00020]
Other DBs
GO: 0006099
Organism
Thermovirga lienii [GN:tli]
Gene
Tlie_1677  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Tlie_1678  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Tlie_0956  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Tlie_0883  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Tlie_1756  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Tlie_0957  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Tlie_0884  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Tlie_1755  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Tlie_0885  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein [KO:K00177] [EC:1.2.7.3]
Tlie_0958  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein [KO:K00177] [EC:1.2.7.3]
Tlie_0955  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Tlie_0882  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Tlie_1893  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
Tlie_1358  hypothetical protein [KO:K00240] [EC:1.3.5.1]
Tlie_0398  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Tlie_0399  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Tlie_1871  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Tlie_1116  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Tlie_1117  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Tlie_1114  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Tlie_1115  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tli00010  Glycolysis / Gluconeogenesis
tli00061  Fatty acid biosynthesis
tli00190  Oxidative phosphorylation
tli00220  Arginine biosynthesis
tli00250  Alanine, aspartate and glutamate metabolism
tli00280  Valine, leucine and isoleucine degradation
tli00350  Tyrosine metabolism
tli00470  D-Amino acid metabolism
tli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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