KEGG   PATHWAY: tmn03008
Entry
tmn03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Phaeoacremonium minimum
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tmn03008  Ribosome biogenesis in eukaryotes
tmn03008

Organism
Phaeoacremonium minimum [GN:tmn]
Gene
UCRPA7_2290  putative casein kinase ii subunit beta-1 protein [KO:K03115]
UCRPA7_3647  putative casein kinase ii subunit alpha protein [KO:K03097] [EC:2.7.11.1]
UCRPA7_1813  putative meiotic recombination protein dmc1 protein [KO:K14545]
UCRPA7_4251  putative small nucleolar ribonucleoprotein complex component protein [KO:K14546]
UCRPA7_3738  putative u3 small nucleolar rna-associated protein [KO:K14548]
UCRPA7_2602  putative u3 small nucleolar rna-associated protein 15 protein [KO:K14549]
UCRPA7_6681  putative u3 small nucleolar rna-associated protein 10 protein [KO:K14550]
UCRPA7_5941  putative wd repeat-containing protein [KO:K14552]
UCRPA7_2569  putative u3 small nucleolar rna-associated protein [KO:K14553]
UCRPA7_5516  putative wd repeat containing protein 36 protein [KO:K14554]
UCRPA7_6730  putative wd domain-containing protein [KO:K14556]
UCRPA7_6048  putative u3 small nucleolar rna-associated protein 6 protein [KO:K14557]
UCRPA7_3037  putative periodic tryptophan protein 2 protein [KO:K14558]
UCRPA7_4158  putative u3 small nucleolar ribonucleoprotein mpp10 protein [KO:K14559]
UCRPA7_954  putative u3 small nucleolar ribonucleoprotein imp3 protein [KO:K14560]
UCRPA7_1706  putative u3 small nucleolar ribonucleoprotein imp4 protein [KO:K14561]
UCRPA7_8392  putative fibrillarin protein [KO:K14563] [EC:2.1.1.-]
UCRPA7_3244  putative protein sik1 protein [KO:K14564]
UCRPA7_1045  putative nucleolar protein nop58 protein [KO:K14565]
UCRPA7_3452  putative snrnp and snornp protein [KO:K12845]
UCRPA7_3051  putative centromere microtubule-binding protein cbf5 protein [KO:K11131] [EC:5.4.99.-]
UCRPA7_1595  putative h aca ribonucleoprotein complex subunit 2 protein [KO:K11129]
UCRPA7_1928  putative h aca ribonucleoprotein complex subunit 1 protein [KO:K11128]
UCRPA7_3505  putative h aca ribonucleoprotein complex subunit 3 protein [KO:K11130]
UCRPA7_5847  putative rrna-processing protein fcf1 protein [KO:K14566]
UCRPA7_4705  putative small nucleolar ribonucleoprotein complex subunit utp14 protein [KO:K14567]
UCRPA7_1956  putative nucleolar essential protein 1 protein [KO:K14568] [EC:2.1.1.260]
UCRPA7_6875  putative gtp binding protein bms1 protein [KO:K14569]
UCRPA7_3755  putative nucleolar atpase protein [KO:K14521] [EC:2.3.1.-]
UCRPA7_2449  putative rna-3 -phosphate cyclase family protein [KO:K11108]
UCRPA7_7061  putative ribonuclease p protein subunit p29 protein [KO:K03538] [EC:3.1.26.5]
UCRPA7_3005  putative rpp14 family protein [KO:K03537] [EC:3.1.26.5]
UCRPA7_4802  putative ribonuclease p subunit pop7 protein [KO:K14526] [EC:3.1.26.5]
UCRPA7_4009  putative rnase p subunit p30 protein [KO:K03539] [EC:3.1.26.5]
UCRPA7_1629  hypothetical protein [KO:K14532]
UCRPA7_1094  putative rna exonuclease protein [KO:K14570] [EC:3.1.-.-]
UCRPA7_7469  putative rna exonuclease protein [KO:K14570] [EC:3.1.-.-]
UCRPA7_2038  putative rna exonuclease protein [KO:K13288] [EC:3.1.-.-]
UCRPA7_5822  putative 5 -3 exoribonuclease 1 protein [KO:K12618] [EC:3.1.13.-]
UCRPA7_7491  putative 5 -3 exoribonuclease 2 protein [KO:K12619] [EC:3.1.13.-]
UCRPA7_7952  putative nucleolar gtp-binding protein 1 protein [KO:K06943]
UCRPA7_5667  putative nucleolar gtp-binding protein 2 protein [KO:K14537]
UCRPA7_2049  putative nuclear gtp-binding protein nug1 protein [KO:K14538]
UCRPA7_5106  putative aaa family atpase 60s ribosome export protein [KO:K14571]
UCRPA7_1431  putative midasin protein [KO:K14572]
UCRPA7_806  putative nucleolar protein 4 protein [KO:K14573]
UCRPA7_3506  putative 20s-pre-rrna d-site endonuclease nob1 protein [KO:K11883]
UCRPA7_4861  putative casein kinase i protein [KO:K14758] [EC:2.7.11.1]
UCRPA7_7565  putative gtp-binding nuclear protein gsp1 ran protein [KO:K07936]
UCRPA7_5086  putative exportin-1 protein [KO:K14290]
UCRPA7_7067  putative nonsense-mediated mrna decay protein 3 protein [KO:K07562]
UCRPA7_3967  putative mrna export factor mex67 protein [KO:K14284]
UCRPA7_6955  putative nuclear transport factor 2 domain-containing protein [KO:K14285]
UCRPA7_6336  putative eukaryotic translation initiation factor 6 protein [KO:K03264]
UCRPA7_6351  putative shwachman-bodian-diamond syndrome protein [KO:K14574]
UCRPA7_2893  putative elongation factor 2 protein [KO:K14536] [EC:3.6.5.-]
UCRPA7_7849  putative ribosome biogenesis gtpase protein [KO:K14539] [EC:3.6.1.-]
UCRPA7_7896  putative aaa family atpase protein [KO:K14575]
UCRPA7_8361  putative pos9-activating factor fap7 protein [KO:K18532] [EC:2.7.4.3]
UCRPA7_6221  putative serine threonine-protein kinase rio1 protein [KO:K07178] [EC:2.7.11.1]
UCRPA7_5538  putative rio1 family protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tmn03010  Ribosome
KO pathway
ko03008   
LinkDB

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