KEGG   PATHWAY: tmw03030
Entry
tmw03030                    Pathway                                
Name
DNA replication - Thermotoga maritima MSB8
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tmw03030  DNA replication
tmw03030

Organism
Thermotoga maritima MSB8 [GN:tmw]
Gene
THMA_0509  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
THMA_0471  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
THMA_0590  polC; DNA polymerase III PolC [KO:K03763] [EC:2.7.7.7]
THMA_0701  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
THMA_0790  DNA polymerase III subunit gamma [KO:K02343] [EC:2.7.7.7]
THMA_0182  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
THMA_0269  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
THMA_1778  DNA helicase [KO:K02314] [EC:5.6.2.3]
THMA_1482  DNA primase [KO:K02316] [EC:2.7.7.101]
THMA_0620  single-stranded DNA-binding protein [KO:K03111]
THMA_0937  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
THMA_1660  DNA polymerase [KO:K02335] [EC:2.7.7.7]
THMA_0096  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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