KEGG   PATHWAY: toc00020
Entry
toc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermosediminibacter oceani
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
toc00020  Citrate cycle (TCA cycle)
toc00020

Module
toc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:toc00020]
toc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:toc00020]
Other DBs
GO: 0006099
Organism
Thermosediminibacter oceani [GN:toc]
Gene
Toce_0808  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Toce_2027  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Toce_1429  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Toce_0834  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Toce_1204  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Toce_0835  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Toce_1203  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Toce_0836  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein [KO:K00177] [EC:1.2.7.3]
Toce_1202  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Toce_0833  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Toce_1205  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Toce_1836  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
Toce_1826  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Toce_1825  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Toce_0101  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Toce_2028  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Toce_1430  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Toce_2139  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Toce_2138  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Toce_2141  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Toce_2140  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
toc00010  Glycolysis / Gluconeogenesis
toc00061  Fatty acid biosynthesis
toc00190  Oxidative phosphorylation
toc00220  Arginine biosynthesis
toc00250  Alanine, aspartate and glutamate metabolism
toc00280  Valine, leucine and isoleucine degradation
toc00350  Tyrosine metabolism
toc00470  D-Amino acid metabolism
toc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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