KEGG   PATHWAY: tpty02010
Entry
tpty02010                   Pathway                                
Name
ABC transporters - Tatumella ptyseos
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
tpty02010  ABC transporters
tpty02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Tatumella ptyseos [GN:tpty]
Gene
NCTC11468_02706  cysP; Thiosulfate-binding protein precursor [KO:K02048]
NCTC11468_03700  sbp_2; Sulfate starvation-induced protein 2 [KO:K23163]
NCTC11468_02705  cysW_3; Sulfate transport system permease protein CysW [KO:K02046]
NCTC11468_02702  cysA; Sulfate/thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
NCTC11468_02905  molybdate ABC transporter periplasmic substrate-binding protein [KO:K15495]
NCTC11468_02904  potH; Putrescine transport system permease protein PotH [KO:K15496]
NCTC11468_03813  nrtA; Nitrate transport protein NrtA precursor [KO:K15576]
NCTC11468_03815  cmpB; Bicarbonate transport system permease protein CmpB [KO:K15577]
NCTC11468_03816  cmpD; Bicarbonate transport ATP-binding protein CmpD [KO:K15578] [EC:7.3.2.4]
NCTC11468_01245  araG; Arabinose import ATP-binding protein AraG [KO:K05776]
NCTC11468_03115  thiB; Thiamine-binding periplasmic protein precursor [KO:K02064]
NCTC11468_03116  cysW_4; Sulfate transport system permease protein CysW [KO:K02063]
NCTC11468_03117  thiQ; Thiamine import ATP-binding protein ThiQ [KO:K02062] [EC:7.6.2.15]
NCTC11468_01527  potD; Spermidine/putrescine-binding periplasmic protein precursor [KO:K11069]
NCTC11468_01528  ydcV; Inner membrane ABC transporter permease protein ydcV [KO:K11070]
NCTC11468_01529  potB; Spermidine/putrescine transport system permease protein PotB [KO:K11071]
NCTC11468_01530  potA_1; Spermidine/putrescine import ATP-binding protein PotA [KO:K11072] [EC:7.6.2.11]
NCTC11468_02155  proX_1; Glycine betaine-binding periplasmic protein precursor [KO:K02002]
NCTC11468_02982  proX_2; Glycine betaine-binding periplasmic protein precursor [KO:K02002]
NCTC11468_02981  proW; Glycine betaine/L-proline transport system permease protein proW [KO:K02001]
NCTC11468_02980  proV_2; Glycine betaine/L-proline transport ATP-binding protein ProV [KO:K02000] [EC:7.6.2.9]
NCTC11468_02209  choline ABC transporter, permease protein [KO:K05846]
NCTC11468_00289  mlaC; Probable phospholipid-binding protein mlaC precursor [KO:K07323]
NCTC11468_00288  mlaD; Probable phospholipid ABC transporter-binding protein mlaD [KO:K02067]
NCTC11468_00287  mlaE; Probable phospholipid ABC transporter permease protein mlaE [KO:K02066]
NCTC11468_00290  mlaB; Probable phospholipid ABC transporter-binding protein mlaB [KO:K07122]
NCTC11468_00286  mlaF; Probable phospholipid import ATP-binding protein MlaF [KO:K02065]
NCTC11468_00041  lacE_1; Lactose-binding protein precursor [KO:K05813]
NCTC11468_00042  ugpA; sn-glycerol-3-phosphate transport system permease protein ugpA [KO:K05814]
NCTC11468_00043  ycjP; Inner membrane ABC transporter permease protein ycjP [KO:K05815]
NCTC11468_00044  ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
NCTC11468_03866  pstS; Phosphate-binding protein pstS precursor [KO:K02040]
NCTC11468_03867  pstC; Phosphate transport system permease protein pstC [KO:K02037]
NCTC11468_03868  pstA; Phosphate transport system permease protein pstA [KO:K02038]
NCTC11468_03869  pstB; Phosphate import ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
NCTC11468_02381  argT_1; Lysine-arginine-ornithine-binding periplasmic protein precursor [KO:K10013]
NCTC11468_02936  argT_3; Lysine-arginine-ornithine-binding periplasmic protein precursor [KO:K10013]
NCTC11468_03799  argT_4; Lysine-arginine-ornithine-binding periplasmic protein precursor [KO:K10013]
NCTC11468_02519  hisM; Histidine transport system permease protein hisM [KO:K10015]
NCTC11468_02520  hisQ; Histidine transport system permease protein hisQ [KO:K10016]
NCTC11468_02518  hisP; Histidine transport ATP-binding protein HisP [KO:K10017] [EC:7.4.2.1]
NCTC11468_02521  argT_2; Lysine-arginine-ornithine-binding periplasmic protein precursor [KO:K10014]
NCTC11468_00364  glnH; Glutamine-binding periplasmic protein precursor [KO:K10036]
NCTC11468_00363  glnP; Glutamine transport system permease protein glnP [KO:K10037]
NCTC11468_00362  glnQ; Glutamine transport ATP-binding protein GlnQ [KO:K10038] [EC:7.4.2.1]
NCTC11468_01308  artI; Putative ABC transporter arginine-binding protein 2 precursor [KO:K09997]
NCTC11468_01307  artM_1; Arginine ABC transporter permease protein ArtM [KO:K09998]
NCTC11468_01309  artP; Arginine transport ATP-binding protein ArtP [KO:K10000] [EC:7.4.2.1]
NCTC11468_02259  Probable amino-acid ABC transporter-binding protein HI_1080 precursor [KO:K02424]
NCTC11468_02257  yecS_3; Inner membrane amino-acid ABC transporter permease protein yecS [KO:K10009]
NCTC11468_02258  tcyC_2; L-cystine import ATP-binding protein TcyC [KO:K10010] [EC:7.4.2.1]
NCTC11468_03001  metQ_1; D-methionine-binding lipoprotein metQ precursor [KO:K02073]
NCTC11468_03826  metQ_2; D-methionine-binding lipoprotein metQ precursor [KO:K02073]
NCTC11468_03000  metI; D-methionine transport system permease protein metI [KO:K02072]
NCTC11468_02999  metN_2; Methionine import ATP-binding protein MetN [KO:K02071]
NCTC11468_01259  livF; LIV-I protein F [KO:K11963]
NCTC11468_00231  oppA_1; Periplasmic oligopeptide-binding protein precursor [KO:K15580]
NCTC11468_02035  oppA_2; Periplasmic oligopeptide-binding protein precursor [KO:K15580]
NCTC11468_01969  mppA_2; Periplasmic murein peptide-binding protein precursor [KO:K15580]
NCTC11468_02034  oppB; Oligopeptide transport system permease protein oppB [KO:K15581]
NCTC11468_02033  oppC; Oligopeptide transport system permease protein oppC [KO:K15582]
NCTC11468_02032  gsiA_14; Glutathione import ATP-binding protein GsiA [KO:K15583]
NCTC11468_02030  gsiA_13; Glutathione import ATP-binding protein GsiA [KO:K10823]
NCTC11468_01980  dppA_3; Dipeptide-binding protein [KO:K19226]
NCTC11468_01981  sapB; Peptide transport system permease protein sapB [KO:K19227]
NCTC11468_01983  sapC_1; Peptide transport system permease protein sapC [KO:K19228]
NCTC11468_01985  gsiA_11; Glutathione import ATP-binding protein GsiA [KO:K19229]
NCTC11468_01986  gsiA_12; Glutathione import ATP-binding protein GsiA [KO:K19230]
NCTC11468_00532  gsiB_2; Glutathione-binding protein gsiB precursor [KO:K13889]
NCTC11468_00220  gsiB_1; Glutathione-binding protein gsiB precursor [KO:K13889]
NCTC11468_00531  gsiC_3; Glutathione transport system permease protein gsiC [KO:K13890]
NCTC11468_00221  gsiC_1; Glutathione transport system permease protein gsiC [KO:K13890]
NCTC11468_00223  gsiD_1; Glutathione transport system permease protein gsiD [KO:K13891]
NCTC11468_00530  gsiD_3; Glutathione transport system permease protein gsiD [KO:K13891]
NCTC11468_00533  gsiA_7; Glutathione import ATP-binding protein GsiA [KO:K13892]
NCTC11468_00219  gsiA_1; Glutathione import ATP-binding protein GsiA [KO:K13892]
NCTC11468_00303  fepB_1; Ferrienterobactin-binding periplasmic protein precursor [KO:K23185]
NCTC11468_00305  fepD; Ferric enterobactin transport system permease protein fepD [KO:K23186]
NCTC11468_00307  fepG_2; Ferric enterobactin transport system permease protein fepG [KO:K23187]
NCTC11468_00308  yusV_1; Probable siderophore transport system ATP-binding protein YusV [KO:K23188] [EC:7.2.2.17 7.2.2.-]
NCTC11468_01845  fhuD_1; Iron(III)-hydroxamate-binding protein fhuD [KO:K23227]
NCTC11468_01844  fhuB_2; Iron(III)-hydroxamate import system permease protein fhuB [KO:K23228]
NCTC11468_01846  fhuC_1; Iron(3+)-hydroxamate import ATP-binding protein FhuC [KO:K10829] [EC:7.2.2.16]
NCTC11468_02117  znuA; High-affinity zinc uptake system protein znuA precursor [KO:K09815]
NCTC11468_02119  znuB_2; High-affinity zinc uptake system membrane protein znuB [KO:K09816]
NCTC11468_02118  znuC; Zinc import ATP-binding protein ZnuC [KO:K09817] [EC:7.2.2.20]
NCTC11468_02392  ABC-2 type transporter [KO:K09690]
NCTC11468_02389  tagH; Teichoic acids export ATP-binding protein TagH [KO:K09691] [EC:7.5.2.14]
NCTC11468_01522  lolC; Lipoprotein-releasing system transmembrane protein lolC [KO:K09808]
NCTC11468_01524  lolE_1; Lipoprotein-releasing system transmembrane protein lolE [KO:K09808]
NCTC11468_01523  lolD; Lipoprotein-releasing system ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
NCTC11468_02563  ccmD; Cytochrome c-type biogenesis protein CcmD [KO:K02196]
NCTC11468_02564  ccmC; Cytochrome c-type biogenesis protein CcmC [KO:K02195]
NCTC11468_02565  ccmB; Cytochrome c-type biogenesis protein CcmB [KO:K02194]
NCTC11468_02566  ccmA; Cytochrome c biogenesis ATP-binding export protein CcmA [KO:K02193] [EC:7.6.2.5]
NCTC11468_00375  lptF; Lipopolysaccharide export system permease protein lptF [KO:K07091]
NCTC11468_00376  lptG; Lipopolysaccharide export system permease protein lptG [KO:K11720]
NCTC11468_00280  lptB; Lipopolysaccharide export system ATP-binding protein LptB [KO:K06861] [EC:7.5.2.5]
NCTC11468_00039  ftsX; Cell division protein FtsX [KO:K09811]
NCTC11468_00038  ftsE; Cell division ATP-binding protein FtsE [KO:K09812]
NCTC11468_01354  msbA_2; Lipid A export ATP-binding/permease protein MsbA [KO:K11085] [EC:7.5.2.6]
NCTC11468_01072  msbA_1; Lipid A export ATP-binding/permease protein MsbA [KO:K18889]
NCTC11468_01073  mdlB_1; Multidrug resistance-like ATP-binding protein MdlB [KO:K18890]
NCTC11468_03874  apxIB_4; RTX-I toxin determinant B [KO:K13409]
NCTC11468_03635  Putative multidrug export ATP-binding/permease protein SAV1866 [KO:K18893]
NCTC11468_03480  apxIB_3; RTX-I toxin determinant B [KO:K12541]
NCTC11468_00568  apxIB_1; RTX-I toxin determinant B [KO:K12541]
NCTC11468_02645  Probable ABC transporter ATP-binding protein HI_0664 [KO:K16012]
NCTC11468_01324  Probable ABC transporter ATP-binding protein HI_0664 [KO:K16012]
NCTC11468_02646  cydD_2; ATP-binding/permease protein CydD [KO:K16013]
NCTC11468_01325  cydD_1; ATP-binding/permease protein CydD [KO:K16013]
NCTC11468_01851  yojI; ABC transporter ATP-binding protein YojI [KO:K06159]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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