KEGG   PATHWAY: tru04744
Entry
tru04744                    Pathway                                
Name
Phototransduction - Takifugu rubripes (torafugu)
Description
Phototransduction is a biochemical process by which the photoreceptor cells generate electrical signals in response to captured photons. The vertebrate cascade starts with the absorption of photons by the photoreceptive pigments, the rhodopsins, which consist of a membrane embedded chromophore, 11-cis-retinal, and a G-protein-coupled receptor, opsin. The photon isomerizes 11-cis-retinal to all-trans-retinal which induces a structural change that activates the opsin. This triggers hydrolysis of cGMP by activating a transducinphosphodiesterase 6 (PDE6) cascade, which results in closure of the cGMP-gated cation channels (CNG) in the plasma membrane and membrane hyperpolarization. The hyperpolarization of the membrane potential of the photoreceptor cell modulates the release of neurotransmitters to downstream cells. Recovery from light involves the deactivation of the light- activated intermediates: photolyzed rhodopsin is phosphorylated by rhodopsin kinase (RK) and subsequently capped off by arrestin; GTP-binding transducin alpha subunit deactivates through a process that is stimulated by RGS9.
Class
Organismal Systems; Sensory system
Pathway map
tru04744  Phototransduction
tru04744

Other DBs
GO: 0009586
Organism
Takifugu rubripes (torafugu) [GN:tru]
Gene
101079163  green-sensitive opsin [KO:K04250]
619285  green opsin [KO:K04250]
619286  rho; rhodopsin [KO:K04250]
778011  rod opsin [KO:K04250]
101064943  grk7; rhodopsin kinase [KO:K00909] [EC:2.7.11.14]
101061321  rhodopsin kinase-like [KO:K00909] [EC:2.7.11.14]
101067484  rhodopsin kinase-like isoform X1 [KO:K00909] [EC:2.7.11.14]
105417278  grk1; rhodopsin kinase [KO:K00909] [EC:2.7.11.14]
101068104  rhodopsin kinase 2-like isoform X1 [KO:K00909] [EC:2.7.11.14]
101061490  visinin-like [KO:K13764]
101079207  rcvrn; recoverin [KO:K13764]
101068478  recoverin-like [KO:K13764]
101068328  S-arrestin-like isoform X1 [KO:K19627]
101068676  guanine nucleotide-binding protein G(t) subunit alpha-2-like [KO:K04631]
101072412  guanine nucleotide-binding protein G(t) subunit alpha-1 [KO:K04631]
101066479  gnb1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [KO:K04536]
101062348  guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like [KO:K04536]
101070134  guanine nucleotide-binding protein G(T) subunit gamma-T1-like [KO:K04548]
101080113  regulator of G-protein signaling 9-like [KO:K13765]
101068567  rgs9; regulator of G-protein signaling 9 isoform X1 [KO:K13765]
115252479  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha-like [KO:K08718] [EC:3.1.4.35]
101070486  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta-like [KO:K13756] [EC:3.1.4.35]
101075210  pde6g; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma [KO:K13759]
101072371  retinal guanylyl cyclase 1-like isoform X2 [KO:K12321] [EC:4.6.1.2]
101072570  retinal guanylyl cyclase 2-like [KO:K12321] [EC:4.6.1.2]
101074569  gucy2f; retinal guanylyl cyclase 2 isoform X3 [KO:K12322] [EC:4.6.1.2]
101068241  retinal guanylyl cyclase 2-like isoform X1 [KO:K12322] [EC:4.6.1.2]
101072180  guanylyl cyclase-activating protein 2-like [KO:K08328]
101072401  guanylyl cyclase-activating protein 2-like [KO:K08328]
101070449  guanylyl cyclase-activating protein 2-like [KO:K08328]
101068477  guanylyl cyclase-activating protein 1-like [KO:K08328]
101076970  guanylyl cyclase-activating protein 1-like [KO:K08328]
101061440  guanylyl cyclase-activating protein 1-like [KO:K08328]
446061  guca1b; guanylyl cyclase-activating protein 2 [KO:K08328]
445952  guca1a; guanylate cyclase activator protein 1 [KO:K08328]
101072173  slc24a1; sodium/potassium/calcium exchanger 1 [KO:K13749]
101069761  sodium/potassium/calcium exchanger 1-like isoform X4 [KO:K13749]
101074696  calm2; calmodulin-2 [KO:K02183]
101072558  calm3; calmodulin-3 [KO:K02183]
101068488  calmodulin [KO:K02183]
101064505  calmodulin-alpha-like [KO:K02183]
101076134  calml4; calmodulin-like protein 4 [KO:K02183]
115251026  calmodulin-like protein 4 [KO:K02183]
101077506  cyclic nucleotide-gated channel rod photoreceptor subunit alpha-like [KO:K04948]
101074936  cyclic nucleotide-gated cation channel beta-1-like isoform X1 [KO:K04952]
101065177  cyclic nucleotide-gated cation channel beta-3-like [KO:K04952]
Compound
C00076  Calcium cation
C00144  GMP
C00238  Potassium cation
C00305  Magnesium cation
C00376  Retinal
C00942  3',5'-Cyclic GMP
C01330  Sodium cation
C02110  11-cis-Retinal
Reference
  Authors
Yau KW, Hardie RC
  Title
Phototransduction motifs and variations.
  Journal
Cell 139:246-64 (2009)
DOI:10.1016/j.cell.2009.09.029
Reference
  Authors
Koch KW, Duda T, Sharma RK
  Title
Photoreceptor specific guanylate cyclases in vertebrate phototransduction.
  Journal
Mol Cell Biochem 230:97-106 (2002)
Reference
PMID:9803480
  Authors
Jindrova H
  Title
Vertebrate phototransduction: activation, recovery, and adaptation.
  Journal
Physiol Res 47:155-68 (1998)
Reference
  Authors
Ebrey T, Koutalos Y
  Title
Vertebrate photoreceptors.
  Journal
Prog Retin Eye Res 20:49-94 (2001)
DOI:10.1016/S1350-9462(00)00014-8
Reference
  Authors
Pepe IM
  Title
Recent advances in our understanding of rhodopsin and phototransduction.
  Journal
Prog Retin Eye Res 20:733-59 (2001)
DOI:10.1016/S1350-9462(01)00013-1
Reference
  Authors
Kramer RH, Molokanova E
  Title
Modulation of cyclic-nucleotide-gated channels and regulation of vertebrate phototransduction.
  Journal
J Exp Biol 204:2921-31 (2001)
Reference
  Authors
Larhammar D, Nordstrom K, Larsson TA
  Title
Evolution of vertebrate rod and cone phototransduction genes.
  Journal
Philos Trans R Soc Lond B Biol Sci 364:2867-80 (2009)
DOI:10.1098/rstb.2009.0077
Reference
  Authors
Dizhoor AM, Olshevskaya EV, Peshenko IV
  Title
Mg2+/Ca2+ cation binding cycle of guanylyl cyclase activating proteins (GCAPs): role in regulation of photoreceptor guanylyl cyclase.
  Journal
Mol Cell Biochem 334:117-24 (2010)
DOI:10.1007/s11010-009-0328-6
Reference
  Authors
Krizaj D, Copenhagen DR
  Title
Calcium regulation in photoreceptors.
  Journal
Front Biosci 7:d2023-44 (2002)
Reference
PMID:9893707
  Authors
Shichida Y, Imai H
  Title
Visual pigment: G-protein-coupled receptor for light signals.
  Journal
Cell Mol Life Sci 54:1299-315 (1998)
DOI:10.1007/s000180050256
Reference
PMID:9419388
  Authors
Pugh EN Jr, Duda T, Sitaramayya A, Sharma RK
  Title
Photoreceptor guanylate cyclases: a review.
  Journal
Biosci Rep 17:429-73 (1997)
DOI:10.1023/A:1027365520442
Reference
  Authors
Luo DG, Xue T, Yau KW
  Title
How vision begins: an odyssey.
  Journal
Proc Natl Acad Sci U S A 105:9855-62 (2008)
DOI:10.1073/pnas.0708405105
Reference
  Authors
Peshenko IV, Dizhoor AM
  Title
Activation and inhibition of photoreceptor guanylyl cyclase by guanylyl cyclase activating protein 1 (GCAP-1): the functional role of Mg2+/Ca2+ exchange in EF-hand domains.
  Journal
J Biol Chem 282:21645-52 (2007)
DOI:10.1074/jbc.M702368200
Reference
  Authors
Ridge KD, Abdulaev NG, Sousa M, Palczewski K
  Title
Phototransduction: crystal clear.
  Journal
Trends Biochem Sci 28:479-87 (2003)
DOI:10.1016/S0968-0004(03)00172-5
Related
pathway
tru00830  Retinol metabolism
KO pathway
ko04744   
LinkDB

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