KEGG   PATHWAY: vau02010
Entry
vau02010                    Pathway                                
Name
ABC transporters - Vibrio anguillarum NB10
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
vau02010  ABC transporters
vau02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Vibrio anguillarum NB10 [GN:vau]
Gene
VANGNB10_cI0443  cysP; Thiosulfate ABC transporter, periplasmic thiosulfate-binding protein [KO:K02048]
VANGNB10_cI0444  cysT; Sulfate ABC transporter, permease protein [KO:K02046]
VANGNB10_cI0445  cysW; Sulfate ABC transporter, permease protein [KO:K02047]
VANGNB10_cI0446  cysA; Sulfate ABC transporter, ATP-binding protein [KO:K02045] [EC:7.3.2.3]
VANGNB10_cII0674c  modA; Molybdate ABC transporter, substrate-binding protein [KO:K02020]
VANGNB10_cII0673c  modB; Molybdate ABC transporter, permease protein [KO:K02018]
VANGNB10_cII0672c  modC; Molybdate transport system ATP-binding protein,ModC [KO:K02017] [EC:7.3.2.5]
VANGNB10_cI1295  Iron(III) ABC transporter, periplasmic iron-compound-binding protein [KO:K02012]
VANGNB10_cI0508  fbpA; iron(III) ABC transporter, periplasmic iron-compound-binding protein [KO:K02012]
VANGNB10_cI1296  Iron(III) ABC transporter, permease protein [KO:K02011]
VANGNB10_cI0509  ABC transporter, permease protein [KO:K02011]
VANGNB10_cI1297  fbpC; Fe(3+) ions import ATP-binding protein FbpC [KO:K02010] [EC:7.2.2.7]
VANGNB10_cI0510  ABC transporter, ATP-binding protein [KO:K02010] [EC:7.2.2.7]
VANGNB10_cI2294c  tbpA; thiamin abc transporter, periplasmic thiamin-binding protein subname: full=thiamine abc transporter, periplasmic thiamin-binding protein [KO:K02064]
VANGNB10_cI2293c  thiP; Thiamine transport system permease protein, ThiP [KO:K02063]
VANGNB10_cI2292c  putative thiamine abc transporter, atp-binding protein [KO:K02062] [EC:7.6.2.15]
VANGNB10_cI0629c  extracellular solute-binding protein [KO:K11069]
VANGNB10_cI1287  potD-1; Bacterial periplasmic spermidine/putrescine-binding protein [KO:K11069]
VANGNB10_cI1288  potD-2; spermidine/putrescine ABC transporter periplasmic substrate-binding protein (SPBP) [KO:K11069]
VANGNB10_cI1286  potC; Spermidine/putrescine transport system permease protein PotC [KO:K11070]
VANGNB10_cI1285  potB; spermidine/putrescine transport system permease protein PotB [KO:K11071]
VANGNB10_cI1284  potA; spermidine/putrescine transport ATP-binding protein PotA [KO:K11072] [EC:7.6.2.11]
VANGNB10_cII0725  Putative glycine betaine-binding ABC transporter (inner membrane) [KO:K02002]
VANGNB10_cII0766  proX; glycine betaine-binding periplasmic protein [KO:K02002]
VANGNB10_cII0726  putative permease of ABC transporter [KO:K02001]
VANGNB10_cII0765  proW; Glycine betaine/L-proline transport system permease protein ProW [KO:K02001]
VANGNB10_cII0727  Putative ATP-binding component of ABC transporter [KO:K02000] [EC:7.6.2.9]
VANGNB10_cII0764  proV; Glycine betaine/L-proline transport ATP-binding protein ProV [KO:K02000] [EC:7.6.2.9]
VANGNB10_cII0127c  Bacterial extracellular solute-binding protein [KO:K10108]
VANGNB10_cII0867c  malE; maltose abc transporter, periplasmic maltose-binding protein [KO:K10108]
VANGNB10_cII0866c  malF; maltose ABC transporter, permease protein [KO:K10109]
VANGNB10_cII0865c  malG; maltose transport system permease protein MalG [KO:K10110]
VANGNB10_cII0868  malK; maltose/maltodextrin import ATP-binding protein MalK [KO:K10111] [EC:7.5.2.-]
VANGNB10_cII0946c  ABC-type sugar transport system, ATPase component [KO:K10112] [EC:7.5.2.-]
VANGNB10_cII0298  mal?; putative extracellular solute-binding protein,family 1 [KO:K15770]
VANGNB10_cII0299  binding-protein-dependent transport systems inner membrane component (ABC transporter permease) [KO:K15771]
VANGNB10_cII0300  binding-protein-dependent transport systems inner membrane component [KO:K15772]
VANGNB10_cII0949c  extracellular solute-binding protein, family 1 [KO:K10240]
VANGNB10_cII0948c  binding-protein-dependent transport systems inner membrane component [KO:K10241]
VANGNB10_cII0947c  binding-protein-dependent transport systems inner membrane component [KO:K10242]
VANGNB10_cI2274c  mlaC; putative phospholipid-binding protein, MlaC [KO:K07323]
VANGNB10_cI2275c  abc-type transport system involved in resistance to organic solvents, periplasmic component [KO:K02067]
VANGNB10_cI2276c  putative uncharacterized protein (TIGR00056) [KO:K02066]
VANGNB10_cI2273c  putative anti-sigma b factor antagonist [KO:K07122]
VANGNB10_cI2277c  toluene tolerance protein, Ttg2A (ABC transporter ATP-binding protein) [KO:K02065]
VANGNB10_cI0973  Putative binding protein component of ABC sugar transporter [KO:K17315]
VANGNB10_cII0968c  rbsB; D-ribose binding protein, periplasmic [KO:K10439]
VANGNB10_cII0969c  rbsC; ribose transport system permease protein RbsC [KO:K10440]
VANGNB10_cII0970c  rbsA; ribose transport ATP-binding protein RbsA [KO:K10441] [EC:7.5.2.7]
VANGNB10_cII0971c  rbsD; D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
VANGNB10_cI2666  ABC-type arabinose transporter, periplasmic binding protein [KO:K10537]
VANGNB10_cI2668  ABC-type arabinose transport system, permease component [KO:K10538]
VANGNB10_cI2667  araG; Arabinose import ATP-binding protein AraG [KO:K10539] [EC:7.5.2.12]
VANGNB10_cI1205  mglB; D-galactose/D-glucose-binding periplasmic protein [KO:K10540]
VANGNB10_cI1207  mglC; D-galactose/D-glucose ABC transporter, permease protein [KO:K10541]
VANGNB10_cI1206  mglA; D-galactose/D-glucose ABC transporter,ATP-binding protein [KO:K10542] [EC:7.5.2.11]
VANGNB10_cI0642  phosphate-binding protein [KO:K02040]
VANGNB10_cII0342c  ABC transporter, periplasmic substrate-binding protein [KO:K02040]
VANGNB10_cII0913c  phosphate ABC transporter, extracellular solute-binding protein [KO:K02040]
VANGNB10_cI0645  pstC; phosphate import protein, transmembrane component PstC [KO:K02037]
VANGNB10_cII0912c  pstC; Phosphate ABC transporter, inner membrane component [KO:K02037]
VANGNB10_cI0646  pstA; phosphate ABC transporter, permease protein [KO:K02038]
VANGNB10_cII0911c  pstA; phosphate ABC transporter, permease protein [KO:K02038]
VANGNB10_cI0647  pstB; Phosphate import ATP-binding protein pstB [KO:K02036] [EC:7.3.2.1]
VANGNB10_cII0910c  pstB; phosphate import ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
VANGNB10_cI1240c  aapJ; General L-amino acid-binding periplasmic protein [KO:K09969]
VANGNB10_cI1239c  aapQ; General L-amino acid ABC transporter permease protein [KO:K09970]
VANGNB10_cI1238c  aapM; General L-amino acid ABC transporter permease protein [KO:K09971]
VANGNB10_cI1237c  aapP; General L-amino acid transport ATP-binding subunit [KO:K09972] [EC:7.4.2.1]
VANGNB10_cI0009c  patH; putative amino-acid ABC transporter,substrate-binding protein [KO:K16961]
VANGNB10_cI0008c  patM; putative amino-acid ABC transporter permease protein, PatM [KO:K16962]
VANGNB10_cI0007c  patP; amino acid ABC transporter, ATP-binding protein [KO:K16963]
VANGNB10_cI1689c  aotJ; arginine/ornithine periplasmic binding protein-dependent transporter [KO:K10022]
VANGNB10_cI1687c  Amino acid ABC transporter, permease protein [KO:K10023]
VANGNB10_cI1688c  Amino acid ABC transporter, permease protein [KO:K10024]
VANGNB10_cI1690c  aotP; Arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component [KO:K10025] [EC:7.4.2.1]
VANGNB10_cI0781c  Putative lipoprotein [KO:K02073]
VANGNB10_cI0782c  metI; D-methionine transport system permease protein MetI [KO:K02072]
VANGNB10_cI0783c  metN; D-methionine transport ATP-binding protein MetN [KO:K02071]
VANGNB10_cI1747c  oppA; Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein [KO:K15580]
VANGNB10_cI1746c  oppB; Oligopeptide ABC transporter, permease protein [KO:K15581]
VANGNB10_cI1745c  oppC; Oligopeptide ABC transporter, permease protein [KO:K15582]
VANGNB10_cI1744c  oppD; Oligopeptide transport ATP-binding protein D [KO:K15583]
VANGNB10_cI1743c  oppF; Oligopeptide transport ATP-binding protein F [KO:K10823]
VANGNB10_cI1125c  sapA; Peptide transport periplasmic protein SapA [KO:K19226]
VANGNB10_cI1124c  sapB; Peptide transport system permease protein sapB [KO:K19227]
VANGNB10_cI1123c  sapC; Peptide transport system permease protein SapC [KO:K19228]
VANGNB10_cI1122c  sapD; peptide transport system ATP-binding protein SapD [KO:K19229]
VANGNB10_cI1121c  sapF; Peptide transport system ATP-binding protein SapF [KO:K19230]
VANGNB10_cII0570c  putative peptide ABC transporter, periplasmic peptide-binding protein [KO:K13893]
VANGNB10_cII0569c  putative peptide ABC transporter, permease protein [KO:K13894]
VANGNB10_cII0568c  putative peptide ABC transporter, permease protein [KO:K13895]
VANGNB10_cII0567c  putative peptide ABC transporter, ATP-binding protein [KO:K13896]
VANGNB10_cI2588c  fhuC; Iron(III) ABC transporter, periplasmic iron-compound-binding protein [KO:K23227]
VANGNB10_cI2587c  fhuD-1; Iron(III) ABC transporter, permease protein [KO:K23228]
VANGNB10_cI2586c  fhuD-2; Iron(III) ABC transporter, permease protein [KO:K23228]
VANGNB10_cI2589c  fhuB; Iron(III) ABC transporter, ATP-binding protein [KO:K10829] [EC:7.2.2.16]
VANGNB10_cI2154  btuF; Vitamin B12-binding protein [KO:K06858]
VANGNB10_cI1523c  btuC?; Putative vitamin B12 ABC transporter, permease protein BtuC [KO:K06073]
VANGNB10_cI1522c  btuD; Vitamin B12 import ATP-binding protein BtuD (vitamin B12-transporting ATPase) [KO:K06074] [EC:7.6.2.8]
VANGNB10_cI1891c  znuA; High-affinity zinc uptake system protein znuA [KO:K09815]
VANGNB10_cI1893  znuB; High-affinity zinc uptake system membrane protein ZnuB [KO:K09816]
VANGNB10_cI1892  znuC; Zinc import ATP-binding protein ZnuC [KO:K09817] [EC:7.2.2.20]
VANGNB10_cI2523c  ABC-transporter, permease protein [KO:K09690]
VANGNB10_cI2522c  Putative uncharacterized protein [KO:K09691] [EC:7.5.2.14]
VANGNB10_cI1707c  lolE; Lipoprotein-releasing system transmembrane protein LolE [KO:K09808]
VANGNB10_cI1709c  lolC; Lipoprotein releasing system, transmembrane protein [KO:K09808]
VANGNB10_cI1708c  lolD; Lipoprotein-releasing system ATP-binding protein [KO:K09810] [EC:7.6.2.-]
VANGNB10_cI1866c  ccmD; Cytochrome c-type biogenesis protein CcmD [KO:K02196]
VANGNB10_cI1867c  ccmC; Cytochrome c-type biogenesis protein ccmC (Heme exporter protein C) [KO:K02195]
VANGNB10_cI1868c  ccmB; Cytochrome c-type biogenesis protein ccmB (Heme exporter protein B) [KO:K02194]
VANGNB10_cI1869c  ccmA; Cytochrome c biogenesis ATP-binding export protein ccmA (Heme exporter protein A) [KO:K02193] [EC:7.6.2.5]
VANGNB10_cI2255c  lptF; Lipopolysaccharide export system permease protein LptF [KO:K07091]
VANGNB10_cI2254c  lptG; lipopolysaccharide export system permease protein LptG [KO:K11720]
VANGNB10_cI2283  ABC transport protein, ATP-binding component [KO:K06861] [EC:7.5.2.5]
VANGNB10_cI0103  ftsX; cell division protein FtsX [KO:K09811]
VANGNB10_cI0102  ftsE; Cell division ATP-binding protein ftsE [KO:K09812]
VANGNB10_cI1704c  msbA; lipid A export ATP-binding/permease protein MsbA [KO:K11085] [EC:7.5.2.6]
VANGNB10_cII0111c  vcaM; ABC-type multidrug efflux pump [KO:K18893]
VANGNB10_cI2591  vcaM; ABC-type multidrug efflux pump, ATP-binding component [KO:K18893]
VANGNB10_cII1001  ABC transporter ATP-binding protein [KO:K12541]
VANGNB10_cI1034c  cydC; Transport ATP-binding protein CydC [KO:K16012]
VANGNB10_cI1035c  cydD; Transport ATP-binding protein CydD [KO:K16013]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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