KEGG   PATHWAY: vve03410
Entry
vve03410                    Pathway                                
Name
Base excision repair - Vespa velutina (Asian hornet)
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
vve03410  Base excision repair
vve03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Vespa velutina (Asian hornet) [GN:vve]
Gene
124956462  N-glycosylase/DNA lyase [KO:K03660] [EC:3.2.2.- 4.2.99.18]
124952871  endonuclease III-like protein 1 [KO:K10773] [EC:3.2.2.- 4.2.99.18]
124957000  single-strand selective monofunctional uracil DNA glycosylase [KO:K10800] [EC:3.2.2.-]
124951890  DNA-3-methyladenine glycosylase-like isoform X1 [KO:K03652] [EC:3.2.2.21]
124952436  G/T mismatch-specific thymine DNA glycosylase-like [KO:K20813] [EC:3.2.2.29]
124953118  uncharacterized protein LOC124953118 [KO:K20813] [EC:3.2.2.29]
124952909  exodeoxyribonuclease isoform X1 [KO:K10771] [EC:3.1.11.2]
124952416  uncharacterized protein F21D5.5 isoform X1 [KO:K08073] [EC:3.1.3.32 2.7.1.78]
124949692  probable tyrosyl-DNA phosphodiesterase isoform X1 [KO:K10862] [EC:3.1.4.-]
124948250  DNA polymerase beta-like [KO:K02330] [EC:2.7.7.7 4.2.99.-]
124951484  high mobility group protein DSP1-like [KO:K10802]
124957342  poly [ADP-ribose] polymerase [KO:K24070] [EC:2.4.2.30]
124948282  uncharacterized protein LOC124948282 isoform X1 [KO:K07759] [EC:3.2.1.143]
124948970  poly(ADP-ribose) glycohydrolase-like isoform X1 [KO:K07759] [EC:3.2.1.143]
124954081  aprataxin-like [KO:K10863] [EC:3.6.1.70 3.6.1.71 3.6.1.72]
124956476  DNA repair protein XRCC1 [KO:K10803]
124950119  DNA polymerase subunit gamma-1, mitochondrial [KO:K02332] [EC:2.7.7.7]
124954307  DNA polymerase subunit gamma-2, mitochondrial [KO:K02333]
124950772  DNA ligase 3 isoform X1 [KO:K10776] [EC:6.5.1.1]
124956317  DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
124949955  DNA polymerase delta subunit 2-like isoform X1 [KO:K02328]
124950704  DNA polymerase delta subunit 2-like [KO:K02328]
124954380  DNA polymerase delta subunit 3-like [KO:K03504]
124949088  DNA polymerase epsilon catalytic subunit 1 isoform X1 [KO:K02324] [EC:2.7.7.7]
124949449  DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
124948423  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
124950313  DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
124953775  proliferating cell nuclear antigen [KO:K04802]
124957356  replication factor C subunit 1 [KO:K10754]
124952825  replication factor C subunit 2 [KO:K10755]
124954003  replication factor C subunit 4 [KO:K10755]
124950096  replication factor C subunit 3 [KO:K10756]
124950437  replication factor C subunit 5 [KO:K10756]
124956031  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
124950302  DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
LinkDB

DBGET integrated database retrieval system