KEGG   PATHWAY: xfs03030
Entry
xfs03030                    Pathway                                
Name
DNA replication - Xylella fastidiosa subsp. sandyi Ann-1
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
xfs03030  DNA replication
xfs03030

Organism
Xylella fastidiosa subsp. sandyi Ann-1 [GN:xfs]
Gene
D934_12565  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D934_01830  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D934_07355  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
D934_11580  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D934_12630  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D934_01495  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D934_00920  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D934_08760  DNA helicase [KO:K02314] [EC:5.6.2.3]
D934_08475  DNA helicase [KO:K02314] [EC:5.6.2.3]
D934_06590  DNA helicase [KO:K02314] [EC:5.6.2.3]
D934_08130  DNA primase [KO:K02316] [EC:2.7.7.101]
D934_08875  single-stranded DNA-binding protein [KO:K03111]
D934_04630  single-stranded DNA-binding protein [KO:K03111]
D934_07655  single-stranded DNA-binding protein [KO:K03111]
D934_08355  single-stranded DNA-binding protein [KO:K03111]
D934_06455  single-stranded DNA-binding protein [KO:K03111]
D934_12265  single-stranded DNA-binding protein [KO:K03111]
D934_12570  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
D934_02690  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
D934_03090  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
D934_13560  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system