KEGG   PATHWAY: xhe03050
Entry
xhe03050                    Pathway                                
Name
Proteasome - Xiphophorus hellerii (green swordtail)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
xhe03050  Proteasome
xhe03050

Other DBs
GO: 0000502
Organism
Xiphophorus hellerii (green swordtail) [GN:xhe]
Gene
116735490  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
116729271  psmd9; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
116720574  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
116727506  26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
116735867  26S proteasome non-ATPase regulatory subunit 11A [KO:K03036]
116710302  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
116729384  psmd7; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
116719275  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
116719249  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
116708238  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
116717042  26S proteasome non-ATPase regulatory subunit 4-like [KO:K03029]
116731290  26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
116707831  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
116725875  psmd1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
116711956  proteasomal ubiquitin receptor ADRM1-like isoform X1 [KO:K06691]
116718402  proteasomal ubiquitin receptor ADRM1-like isoform X1 [KO:K06691]
116736561  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
116734493  psmc1; 26S proteasome regulatory subunit 4 [KO:K03062]
116727354  psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
116733635  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
116718739  psmc3; LOW QUALITY PROTEIN: 26S proteasome regulatory subunit 6A [KO:K03065]
116717585  psmc4; 26S proteasome regulatory subunit 6B [KO:K03063]
116711564  psme1; proteasome activator complex subunit 1 [KO:K06696]
116711470  psme2; proteasome activator complex subunit 2 [KO:K06697]
116727033  psme3; proteasome activator complex subunit 3 [KO:K06698]
116713434  psme4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
116727591  proteasome activator complex subunit 4B-like [KO:K06699]
116734359  proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
116708031  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
116708962  psma6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
116717205  psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
116719108  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
116722277  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
116710508  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
116737078  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
116709522  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
116732024  psmb6; proteasome subunit beta type-6 isoform X1 [KO:K02738] [EC:3.4.25.1]
116734573  proteasome subunit beta type-6-like [KO:K02738] [EC:3.4.25.1]
116730569  proteasome subunit beta type-6-B like protein [KO:K02738] [EC:3.4.25.1]
116723838  psmb7; proteasome subunit beta type-7 isoform X1 [KO:K02739] [EC:3.4.25.1]
116730566  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
116725098  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
116719775  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
116731312  psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
116722222  psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
116718755  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
116731447  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
116730570  proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
116730567  proteasome subunit beta type-8-like [KO:K02740] [EC:3.4.25.1]
116726196  proteasome subunit beta type-11-like [KO:K11598] [EC:3.4.25.1]
116722221  proteasome subunit beta type-11-like [KO:K11598] [EC:3.4.25.1]
116709920  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
116709925  LOW QUALITY PROTEIN: proteasome inhibitor PI31 subunit-like [KO:K06700]
116712326  pomp; proteasome maturation protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
xhe04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

DBGET integrated database retrieval system