KEGG   PATHWAY: pdf00020
Entry
pdf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridioides difficile 630Derm
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdf00020  Citrate cycle (TCA cycle)
pdf00020

Module
pdf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pdf00020]
Other DBs
GO: 0006099
Organism
Clostridioides difficile 630Derm [GN:pdf]
Gene
CD630DERM_08330  acnB; Aconitate hydratase (Citrate hydro-lyase) [KO:K01681] [EC:4.2.1.3]
CD630DERM_08340  icd; Isocitrate dehydrogenase NAD-dependent [KO:K00030] [EC:1.1.1.41]
CD630DERM_00390  acoL; Acetoin dehydrogenase E3 component(dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
CD630DERM_07230  Bifunctional carbon monoxidedehydrogenase/acetyl-CoA synthase, dihydrolipoyldehydrogenase subunit [KO:K00382] [EC:1.8.1.4]
CD630DERM_01160  putative ferredoxin/flavodoxinoxidoreductase,alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CD630DERM_21990  putative ferredoxin/flavodoxinoxidoreductase,alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CD630DERM_24290  putative flavodoxin/ferredoxin oxidoreductasealpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CD630DERM_01170  putative ferredoxin/flavodoxinoxidoreductase,beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CD630DERM_21980  putative ferredoxin/flavodoxinoxidoreductase,beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CD630DERM_24280  putative flavodoxin/ferredoxin oxidoreductasebeta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CD630DERM_01180  putative ferredoxin/flavodoxinoxidoreductase,gamma subunit [KO:K00177] [EC:1.2.7.3]
CD630DERM_21970  putative ferredoxin/flavodoxinoxidoreductase,gamma subunit [KO:K00177] [EC:1.2.7.3]
CD630DERM_24270  putative flavodoxin/ferredoxin oxidoreductasegamma subunit [KO:K00177] [EC:1.2.7.3]
CD630DERM_01150  putative 4Fe-4S ferredoxin, iron-sulfur bindingdomain protein, delta subunit [KO:K00176] [EC:1.2.7.3]
CD630DERM_21991  putative 4Fe-4S ferredoxin iron-sulfur bindingdomain-containing protein [KO:K00176] [EC:1.2.7.3]
CD630DERM_24291  putative 4Fe-4S ferredoxin, iron-sulfur bindingdomain protein, delta subunit [KO:K00176] [EC:1.2.7.3]
CD630DERM_23430  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CD630DERM_10030  fumA; Fumarate hydratase class I, subunit A [KO:K01677] [EC:4.2.1.2]
CD630DERM_10040  fumB; Fumarate hydratase class I, subunit B [KO:K01678] [EC:4.2.1.2]
CD630DERM_00210  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CD630DERM_00380  acoC; Acetoin dehydrogenase E2 component(dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
CD630DERM_26820  pfo; Pyruvate-ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pdf00010  Glycolysis / Gluconeogenesis
pdf00053  Ascorbate and aldarate metabolism
pdf00061  Fatty acid biosynthesis
pdf00071  Fatty acid degradation
pdf00190  Oxidative phosphorylation
pdf00220  Arginine biosynthesis
pdf00250  Alanine, aspartate and glutamate metabolism
pdf00280  Valine, leucine and isoleucine degradation
pdf00350  Tyrosine metabolism
pdf00470  D-Amino acid metabolism
pdf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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