KEGG   PATHWAY: pfs00920
Entry
pfs00920                    Pathway                                
Name
Sulfur metabolism - Pseudomonas fluorescens SBW25
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
pfs00920  Sulfur metabolism
pfs00920

Module
pfs_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pfs00920]
pfs_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pfs00920]
Other DBs
GO: 0006790
Organism
Pseudomonas fluorescens SBW25 [GN:pfs]
Gene
PFLU_1796  sbp; Sulfate ABC transport system, substrate-binding protein [KO:K02048]
PFLU_0187  sbp; Sulfate ABC transport system, sulfate-binding protein [KO:K23163]
PFLU_0188  cysU; Sulfate transport system permease protein CysT [KO:K02046]
PFLU_0189  cysW; Sulfate ABC transport system, permease protein [KO:K02047]
PFLU_0190  cysA; Sulfate/thiosulfate import ATP-binding protein CysA (EC (Sulfate-transporting ATPase) [KO:K02045] [EC:7.3.2.3]
PFLU_0255  tauA; Taurine ABC transport system, substrate-binding periplasmic protein [KO:K15551]
PFLU_0253  tauC; Taurine ABC transport system, permease protein [KO:K15552]
PFLU_0254  tauB; Taurine import ATP-binding protein TauB (EC [KO:K10831] [EC:7.6.2.7]
PFLU_0252  tauD; Alpha-ketoglutarate-dependent taurine dioxygenase (EC [KO:K03119] [EC:1.14.11.17]
PFLU_2791  Putative substrate-binding transport protein [KO:K15553]
PFLU_3689  Putative alkanesulfonate transport protein (ABC superfamily, peri_bind) [KO:K15553]
PFLU_4087  Alkanesulfonate transport binding protein [KO:K15553]
PFLU_5857  ssuA; Putative aliphatic sulfonatesABC transport system, substrate-binding protein [KO:K15553]
PFLU_3722  Putative phosphorous compounds metabolism-related protein [KO:K15553]
PFLU_0201  Putative ABC sulfu transport system, substrate-binding protein [KO:K15553]
PFLU_3721  Putative aliphatic sulfonates binding protein [KO:K15553]
PFLU_4263  Putative alkanesulfonate transport protein [KO:K15553]
PFLU_3739  ABC transporter periplasmic binding protein [KO:K15553]
PFLU_3719  Putative lipoprotein [KO:K15553]
PFLU_0124  Puative ABC transport system, substrate-binding protein [KO:K15553]
PFLU_5855  ssuC; Putative aliphatic sulfonates ABC transport system, permease protein [KO:K15554]
PFLU_2790  Putative integral membrane transport protein [KO:K15554]
PFLU_0200  Putative ABC sulfur transport system, membrane protein [KO:K15554]
PFLU_0126  Putative ABC transport system, permease [KO:K15554]
PFLU_3718  Putative inner membrane component of binding-protein-dependent transport system [KO:K15554]
PFLU_5854  ssuB; Aliphatic sulfonates import ATP-binding protein SsuB (EC [KO:K15555] [EC:7.6.2.14]
PFLU_0199  Putative ABC sulfur transport system, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
PFLU_2789  Aliphatic sulfonates import ATP-binding protein SsuB (EC [KO:K15555] [EC:7.6.2.14]
PFLU_0125  Putative ABC transport system, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
PFLU_3717  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
PFLU_2057  ssuD; Alkanesulfonate monooxygenase (EC (FMNH2-dependent aliphatic sulfonate monooxygenase) [KO:K04091] [EC:1.14.14.5 1.14.14.34]
PFLU_3682  Putative alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
PFLU_5856  ssuD; Alkanesulfonate monooxygenase (EC (FMNH2-dependent aliphatic sulfonate monooxygenase) [KO:K04091] [EC:1.14.14.5 1.14.14.34]
PFLU_2210  Putative monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
PFLU_2211  Putative monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
PFLU_2058  Putative FMN reductase [KO:K00299] [EC:1.5.1.38]
PFLU_5858  ssuE; FMN reductase (EC [KO:K00299] [EC:1.5.1.38]
PFLU_0761  cysN; Multifunctional fusion protein [Includes: Sulfate adenylyltransferase subunit 1 (EC (ATP-sulfurylase large subunit) (Sulfate adenylate transferase) (SAT); Adenylyl-sulfate kinase (EC (APS kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) (Adenosine-5'-phosphosulfate kinase)] [KO:K00955] [EC:2.7.7.4 2.7.1.25]
PFLU_0760  cysD; Sulfate adenylyltransferase subunit 2 (EC (ATP-sulfurylase small subunit) (Sulfate adenylate transferase) (SAT) [KO:K00957] [EC:2.7.7.4]
PFLU_2097  cysC; Adenylyl-sulfate kinase (EC (APS kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) (Adenosine-5'-phosphosulfate kinase) [KO:K00860] [EC:2.7.1.25]
PFLU_0284  3'(2'),5'-bisphosphate nucleotidase CysQ (EC (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (3'-phosphoadenosine 5'-phosphate phosphatase) (PAP phosphatase) [KO:K01082] [EC:3.1.3.7]
PFLU_4642  Phosphoadenosine phosphosulfate reductase (EC (3'-phosphoadenylylsulfate reductase) (PAPS reductase, thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase) [KO:K00390] [EC:1.8.4.8 1.8.4.10]
PFLU_0808  Putative transport-related membrane protein [KO:K00380] [EC:1.8.1.2]
PFLU_3426  Putative bifunctional reductase (EC [KO:K00380] [EC:1.8.1.2]
PFLU_2657  Putative sulfite reductase [KO:K00381] [EC:1.8.1.2]
PFLU_3960  Putative oxidoreductase [KO:K17218] [EC:1.8.5.4]
PFLU_5786  Putative sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
PFLU_0506  rhdA; Sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
PFLU_5581  glpE; Thiosulfate sulfurtransferase GlpE (EC [KO:K02439] [EC:2.8.1.1]
PFLU_0248  srpH; Serine O-acetyltransferase (EC [KO:K00640] [EC:2.3.1.30]
PFLU_4626  Serine O-acetyltransferase (EC [KO:K00640] [EC:2.3.1.30]
PFLU_5070  Serine O-acetyltransferase (EC [KO:K00640] [EC:2.3.1.30]
PFLU_1540  cysK; Cysteine synthase (EC [KO:K01738] [EC:2.5.1.47]
PFLU_4625  Putative O-acetylserine (Thiol)-lyase [KO:K01738] [EC:2.5.1.47]
PFLU_1333  PALP domain-containing protein [KO:K01738] [EC:2.5.1.47]
PFLU_5766  Homoserine O-succinyltransferase (HST) (EC (Homoserine transsuccinylase) (HTS) [KO:K00641] [EC:2.3.1.31 2.3.1.46]
PFLU_3407  Putative cystathionine gamma-synthase (EC [KO:K01739] [EC:2.5.1.48]
PFLU_4182  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
PFLU_2730  Luciferase-like monooxygenase [KO:K17228] [EC:1.14.14.35]
PFLU_5607  Putative dehydrogenase [KO:K20035] [EC:1.3.99.41]
PFLU_5606  Putative dehydrogenase [KO:K20035] [EC:1.3.99.41]
PFLU_5609  Putative dehydrogenase [KO:K20035] [EC:1.3.99.41]
PFLU_2454  Putative hydratase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
pfs00260  Glycine, serine and threonine metabolism
pfs00270  Cysteine and methionine metabolism
pfs00680  Methane metabolism
KO pathway
ko00920   
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