KEGG   PATHWAY: piz02010
Entry
piz02010                    Pathway                                
Name
ABC transporters - Pseudomonas izuensis
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
piz02010  ABC transporters
piz02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Pseudomonas izuensis [GN:piz]
Gene
LAB08_R00240  choX; choline ABC transporter substrate-binding protein [KO:K02002]
LAB08_R00350  [KO:K02066]
LAB08_R00360  [KO:K02065]
LAB08_R00370  [KO:K02067]
LAB08_R00570  [KO:K09815]
LAB08_R00590  znuC; zinc ABC transporter ATP-binding protein ZnuC [KO:K09817] [EC:7.2.2.20]
LAB08_R00600  znuB; zinc ABC transporter permease subunit ZnuB [KO:K09816]
LAB08_R00630  [KO:K02071]
LAB08_R00640  [KO:K02072]
LAB08_R00650  [KO:K02073]
LAB08_R01360  [KO:K15553]
LAB08_R01370  [KO:K15555] [EC:7.6.2.14]
LAB08_R01380  [KO:K15554]
LAB08_R01840  [KO:K23163]
LAB08_R01850  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
LAB08_R01860  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
LAB08_R01870  [KO:K02045] [EC:7.3.2.3]
LAB08_R01940  [KO:K02073]
LAB08_R02070  [KO:K02072]
LAB08_R02080  [KO:K02071]
LAB08_R02090  [KO:K02073]
LAB08_R02140  yecC; L-cystine ABC transporter ATP-binding protein YecC [KO:K10010] [EC:7.4.2.1]
LAB08_R02150  tcyL; cystine ABC transporter permease [KO:K10009]
LAB08_R02160  tcyJ; cystine ABC transporter substrate-binding protein [KO:K02424]
LAB08_R02230  tauC; taurine ABC transporter permease TauC [KO:K15552]
LAB08_R02240  tauB; taurine ABC transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
LAB08_R02250  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
LAB08_R02710  [KO:K23057]
LAB08_R02720  [KO:K23056]
LAB08_R02730  [KO:K23055]
LAB08_R02740  [KO:K23058]
LAB08_R03250  [KO:K02002]
LAB08_R03260  [KO:K02001]
LAB08_R03270  [KO:K02000] [EC:7.6.2.9]
LAB08_R03330  [KO:K02002]
LAB08_R04400  msbA; lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
LAB08_R04870  [KO:K02011]
LAB08_R04880  [KO:K02012]
LAB08_R05110  [KO:K01999]
LAB08_R05120  [KO:K01997]
LAB08_R05130  livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998]
LAB08_R05140  [KO:K01995]
LAB08_R05150  [KO:K01996]
LAB08_R05480  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
LAB08_R05490  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
LAB08_R05500  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
LAB08_R05510  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
LAB08_R05520  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
LAB08_R07300  [KO:K05847] [EC:7.6.2.9]
LAB08_R07310  [KO:K05846]
LAB08_R07320  [KO:K05845]
LAB08_R07330  [KO:K05846]
LAB08_R07370  [KO:K12372]
LAB08_R07380  [KO:K12371]
LAB08_R07390  [KO:K12370]
LAB08_R07400  [KO:K12369]
LAB08_R07410  [KO:K12368]
LAB08_R07430  [KO:K12368]
LAB08_R07440  [KO:K12368]
LAB08_R07480  [KO:K02471]
LAB08_R07830  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
LAB08_R07880  [KO:K02065]
LAB08_R07890  mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE [KO:K02066]
LAB08_R07900  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
LAB08_R07910  [KO:K07323]
LAB08_R07920  [KO:K07122]
LAB08_R09460  lptF; LPS export ABC transporter permease LptF [KO:K07091]
LAB08_R09470  lptG; LPS export ABC transporter permease LptG [KO:K11720]
LAB08_R10200  [KO:K10004] [EC:7.4.2.1]
LAB08_R10210  [KO:K10002]
LAB08_R10220  [KO:K10003]
LAB08_R10230  [KO:K10001]
LAB08_R11530  [KO:K10017] [EC:7.4.2.1]
LAB08_R11550  [KO:K10015]
LAB08_R11560  [KO:K10016]
LAB08_R11570  [KO:K10014]
LAB08_R11830  [KO:K01996]
LAB08_R11840  livG; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG [KO:K01995]
LAB08_R11850  [KO:K01998]
LAB08_R11860  livH; high-affinity branched-chain amino acid ABC transporter permease LivH [KO:K01997]
LAB08_R11870  [KO:K01999]
LAB08_R14210  [KO:K12541]
LAB08_R15110  [KO:K09690]
LAB08_R15120  [KO:K09691] [EC:7.5.2.14]
LAB08_R16690  [KO:K10107]
LAB08_R16700  [KO:K09689] [EC:7.6.2.12]
LAB08_R16710  [KO:K09688]
LAB08_R17040  [KO:K09808]
LAB08_R17050  lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
LAB08_R17060  [KO:K09808]
LAB08_R18260  [KO:K10439]
LAB08_R18270  [KO:K10441] [EC:7.5.2.7]
LAB08_R18280  [KO:K10440]
LAB08_R18310  rbsD; D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
LAB08_R18780  [KO:K10001]
LAB08_R19130  [KO:K10025] [EC:7.4.2.1]
LAB08_R19150  [KO:K10023]
LAB08_R19160  [KO:K10024]
LAB08_R19170  [KO:K10022]
LAB08_R20210  [KO:K10022]
LAB08_R21200  [KO:K11073]
LAB08_R21480  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
LAB08_R21490  [KO:K02042]
LAB08_R21500  [KO:K02041] [EC:7.3.2.2]
LAB08_R21510  [KO:K02044]
LAB08_R21890  [KO:K23061]
LAB08_R21900  [KO:K23062]
LAB08_R21910  [KO:K23063]
LAB08_R21920  [KO:K23064]
LAB08_R22670  [KO:K11073]
LAB08_R23240  [KO:K10439]
LAB08_R23250  [KO:K10441] [EC:7.5.2.7]
LAB08_R23260  [KO:K10440]
LAB08_R23460  [KO:K10440]
LAB08_R23470  [KO:K10439]
LAB08_R23480  [KO:K10441] [EC:7.5.2.7]
LAB08_R23760  [KO:K15553]
LAB08_R23770  [KO:K15554]
LAB08_R23780  [KO:K15555] [EC:7.6.2.14]
LAB08_R23910  [KO:K11069]
LAB08_R23920  [KO:K11070]
LAB08_R23930  [KO:K11071]
LAB08_R23940  [KO:K11072] [EC:7.6.2.11]
LAB08_R25630  [KO:K13896]
LAB08_R25640  [KO:K13895]
LAB08_R25650  [KO:K13894]
LAB08_R25660  [KO:K13893]
LAB08_R26490  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
LAB08_R26500  modB; molybdate ABC transporter permease subunit [KO:K02018]
LAB08_R26510  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
LAB08_R27390  [KO:K10014]
LAB08_R27400  [KO:K10016]
LAB08_R27410  [KO:K10015]
LAB08_R27420  [KO:K10017] [EC:7.4.2.1]
LAB08_R27650  [KO:K02010] [EC:7.2.2.7]
LAB08_R27660  [KO:K02011]
LAB08_R27670  [KO:K02012]
LAB08_R27750  [KO:K11073]
LAB08_R29100  [KO:K18893]
LAB08_R29350  [KO:K11072] [EC:7.6.2.11]
LAB08_R29360  [KO:K11070]
LAB08_R29370  [KO:K11071]
LAB08_R29380  [KO:K11069]
LAB08_R29950  [KO:K12536]
LAB08_R29990  [KO:K11073]
LAB08_R30320  [KO:K10227]
LAB08_R30330  [KO:K10228]
LAB08_R30340  [KO:K10229]
LAB08_R30350  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111] [EC:7.5.2.-]
LAB08_R30800  [KO:K11073]
LAB08_R31900  [KO:K13893]
LAB08_R31910  [KO:K13893]
LAB08_R31920  [KO:K13894]
LAB08_R31930  [KO:K13895]
LAB08_R31940  [KO:K13896]
LAB08_R32750  [KO:K02020]
LAB08_R33520  potA; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
LAB08_R33530  [KO:K11075]
LAB08_R33540  [KO:K11074]
LAB08_R33550  [KO:K11073]
LAB08_R35880  [KO:K06160]
LAB08_R35900  [KO:K02471]
LAB08_R36340  [KO:K10014]
LAB08_R36360  [KO:K10017] [EC:7.4.2.1]
LAB08_R36370  [KO:K10015]
LAB08_R36380  hisQ; histidine ABC transporter permease HisQ [KO:K10016]
LAB08_R36390  [KO:K10013]
LAB08_R37050  [KO:K11073]
LAB08_R37580  [KO:K10017] [EC:7.4.2.1]
LAB08_R37590  [KO:K10015]
LAB08_R37600  hisQ; histidine ABC transporter permease HisQ [KO:K10016]
LAB08_R37610  [KO:K10014]
LAB08_R37820  [KO:K02002]
LAB08_R38320  [KO:K11073]
LAB08_R39550  [KO:K17321]
LAB08_R39570  [KO:K17323]
LAB08_R39580  [KO:K17322]
LAB08_R39590  [KO:K17325]
LAB08_R39600  [KO:K17324]
LAB08_R39740  [KO:K02040]
LAB08_R40250  [KO:K10017] [EC:7.4.2.1]
LAB08_R40260  [KO:K10015]
LAB08_R40270  hisQ; histidine ABC transporter permease HisQ [KO:K10016]
LAB08_R40280  [KO:K10013]
LAB08_R40340  [KO:K12536]
LAB08_R41980  [KO:K11073]
LAB08_R42060  [KO:K02002]
LAB08_R42720  [KO:K02073]
LAB08_R42730  [KO:K02072]
LAB08_R45220  [KO:K02002]
LAB08_R45400  [KO:K02048]
LAB08_R45550  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
LAB08_R45560  phnD; phosphonate ABC transporter substrate-binding protein [KO:K02044]
LAB08_R45570  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
LAB08_R45660  ccmD; heme exporter protein CcmD [KO:K02196]
LAB08_R45670  [KO:K02195]
LAB08_R45680  ccmB; heme exporter protein CcmB [KO:K02194]
LAB08_R45690  ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA [KO:K02193] [EC:7.6.2.5]
LAB08_R46540  [KO:K18893]
LAB08_R47470  [KO:K10025] [EC:7.4.2.1]
LAB08_R47490  [KO:K10023]
LAB08_R47500  [KO:K10024]
LAB08_R47510  [KO:K10022]
LAB08_R47980  [KO:K02002]
LAB08_R48210  [KO:K10112] [EC:7.5.2.-]
LAB08_R48220  [KO:K17317]
LAB08_R48230  [KO:K17316]
LAB08_R48240  [KO:K17315]
LAB08_R49790  [KO:K02010] [EC:7.2.2.7]
LAB08_R50250  [KO:K09972] [EC:7.4.2.1]
LAB08_R50260  [KO:K09971]
LAB08_R50270  [KO:K09970]
LAB08_R50280  [KO:K09969]
LAB08_R50340  [KO:K10022]
LAB08_R51550  [KO:K11072] [EC:7.6.2.11]
LAB08_R51560  [KO:K11071]
LAB08_R51570  [KO:K11070]
LAB08_R51580  [KO:K11069]
LAB08_R54120  [KO:K06858]
LAB08_R56260  choX; choline ABC transporter substrate-binding protein [KO:K02002]
LAB08_R56340  [KO:K02002]
LAB08_R56350  choW; choline ABC transporter permease subunit [KO:K02001]
LAB08_R56360  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
LAB08_R57250  ftsX; cell division protein FtsX [KO:K09811]
LAB08_R57260  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
LAB08_R57540  [KO:K02012]
LAB08_R57550  [KO:K02011]
LAB08_R57560  [KO:K02010] [EC:7.2.2.7]
LAB08_R57760  [KO:K02424]
LAB08_R57850  [KO:K11074]
LAB08_R57860  [KO:K11075]
LAB08_R57870  potA; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
LAB08_R57880  [KO:K11073]
LAB08_R57890  [KO:K11073]
LAB08_R57960  ssuB; aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
LAB08_R57970  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
LAB08_R57990  [KO:K15553]
LAB08_R58040  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
LAB08_R58160  [KO:K02011]
LAB08_R58170  [KO:K02012]
LAB08_R59030  [KO:K12368]
LAB08_R59600  [KO:K02036] [EC:7.3.2.1]
LAB08_R59610  pstA; phosphate ABC transporter permease PstA [KO:K02038]
LAB08_R59620  [KO:K02037]
LAB08_R59630  [KO:K02040]
LAB08_R59770  [KO:K11073]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
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