KEGG   PATHWAY: psmb03030
Entry
psmb03030                   Pathway                                
Name
DNA replication - Pseudoalteromonas sp. MT33b
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
psmb03030  DNA replication
psmb03030

Organism
Pseudoalteromonas sp. MT33b [GN:psmb]
Gene
H3302_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
H3302_01825  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
H3302_02715  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
H3302_03300  [KO:K02342] [EC:2.7.7.7]
H3302_05365  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
H3302_05370  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
H3302_05705  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
H3302_07505  [KO:K02342] [EC:2.7.7.7]
H3302_08840  [KO:K02341] [EC:2.7.7.7]
H3302_09695  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
H3302_09935  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
H3302_09940  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
H3302_10195  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
H3302_12485  [KO:K02339] [EC:2.7.7.7]
H3302_13680  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
H3302_13965  ssb; single-stranded DNA-binding protein [KO:K03111]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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